BAC Information

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BAC

Clone NameMSMg01-409E15
Chromosome4 (Build37)
Map Location 53,926,003 - 54,115,149
singlet/doubletdoublet
Overlap geneLOC100041280
Upstream geneOlfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409E15.T7 (MSMg01no409_e15.b1)MSMg01-409E15.TJ (MSMg01no409_e15.g1)
ACCAG506809AG506810
length783771
length of high quality
(start - end)		559 (46 - 604)593 (77 - 669)
definitionCHROMAT_FILE: MSMg01no409_e15.b1 PHD_FILE: MSMg01no409_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:35 2005CHROMAT_FILE: MSMg01no409_e15.g1 PHD_FILE: MSMg01no409_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,926,003 - 53,926,558)(54,114,765 - 54,115,149)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTATATACCAGGCTGGCCTTGAACTCAGAAATCCGTCTGCCT
TGCCTCCCAAGTACTGGGATTGAAGGTGTGCACCACCACCGCCCAGCAGT
CTGTGTGCTTCTTAAAATAGGTTGTAACTGAGTCTGATAGCTTCTAGTGA
GTTCAGCGAGTCCTTCTTGAAAATTATTAAAACTTCCAAAAGTTTAGAGA
AGCCTTGAGTTTGCAGTATTAGATGGAAGTACAGCCCAAGGACTATGCCC
TTAAAATGCTCTCAACTCAGTAAGCAGAACAGGCCAAGAGAGAAACTTTT
TATCAAAGGAAGTGGATGATACTCTTTAAAACCTGTGCATATCATAAAAT
GCAAAGCAAGGCTGTGGACCTCTCCTAAGGGAGACAAGCCTAAGGGGGCG
TGGTAGCTAAGTGCTAAGCGTAAGCTTAGGCTGCAATTTGAATGGGAGCA
AAGAAAGCTCCATAAAGGATGTTTGAATCCATCAGTAAAATTGGAAAACA
GAGAGTAGATTGAAATAAAGAATTAGATCTGTGCTAGACTGGCAGAAACC
AGCTACTGCGGTTATAAGGAGAGTGCCCTTGCTCCTCTTAGGGATTGCAC
ACCAGAGCATTTAGAGGTAAAGGGTCCTAATGTTTCAGATGGTTTATAAA
AATTATATACCGAGAAAGATAGAGTTAAGGATACTGCATATTGGACCAAA
TACCAACCTGAACCGGAAATAAGAAAAAAGGGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTTCCCAGGACTTACACACTG
GGATCAAATTTCTGACTTGAAATTTTGGAAACATGCCCAAACCACAGTGT
TGACTAAACACCTAAGGCATTGCTTCAAATTCACAAGTATTCCCTAATCT
GCATTCATTCTAGGTATTTATTTGAGTCCTATTGAACAACAACAAAAGAC
TATTAAAACTAACTTGAAAACAAGAGTGGTTTAACATATGGTGCTGGTCA
AACTGGATAGCTACAGCTCAGAAAATGATTCTAGATCCTTACCTCTTACC
CTGCACAGAAGTCAACTCCAAATGCATTAAAGGCTTCAATATAAGTCCCA
ATACCTTGAAAGAATTGAAGAAGAAAGTAGAGCATATGCTCTCACTGACA
AGCCCGGGAAAGTACTTTCTGAATAGGACCACAGCAGCACAGGCACTGAG
GGCAACAACTGAAAATTGGTTCCTATCGTGAAACTAAAAAACCTGATAGA
AGGTATCTAACAAAGGACATCATCATTTGAATAAAGAGGCAGCTTACAGA
ATGGAAAAAAATCTTTATCAGCTACAGAGCTGACAGAAAGTTAGTATCTA
TAATATACAAAAAAAAAAAAACCTTTAACTCTAAGAAAACAACACAACTG
AAAATTCTCTAAAGAAGAAATGCATTGGGATGGGAGTTTTTTGCTTTGCT
TTTTGTTTGTCATTTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_e15.b1 MSMg01no409_e15.b1 CHROMAT_FILE:
MSMg01no409_e15.b1 PHD_FILE: MSMg01no409_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:35 2005
         (559 letters)



>mm_chr4_53925800_53926758
          Length = 959

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctatataccaggctggccttgaactcagaaatccgtctgccttgcctccc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctatagaccaggctggccttgaactcagaaatccgtctgccttgcctccc 263

                                                                       
Query: 64  aagtactgggattgaaggtgtgcaccaccaccgcccagcagtctgtgtgcttcttaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtactgggattgaaggtgtgcaccaccaccgcccagcagtctgtgtgcttcttaaaat 323

                                                                       
Query: 124 aggttgtaactgagtctgatagcttctagtgagttcagcgagtccttcttgaaaattatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggttgtaactgagtctgatagcttctagtgagttcagcgagtccttcttgaaaattatt 383

                                                                       
Query: 184 aaaacttccaaaagtttagagaagccttgagtttgcagtattagatggaagtacagccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacttccaaaagtttagagaagccttgagtttgcagtattagatggaagtacagccca 443

                                                                       
Query: 244 aggactatgcccttaaaatgctctcaactcagtaagcagaacaggccaagagagaaactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggactatgcccttaaaatgctctcaactcagtaagcagaacaggccaagagagaaactt 503

                                                                       
Query: 304 tttatcaaaggaagtggatgatactctttaaaacctgtgcatatcataaaatgcaaagca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttatcaaaggaagtggatgatactctttaaaacctgtgcatatcataaaatgcaaagca 563

                                                                       
Query: 364 aggctgtggacctctcctaagggagacaagcctaagggggcgtggtagctaagtgctaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggctgtggacctctcctaagggagacaagcctaagggggcgtggtagctaagtgctaag 623

                                                                       
Query: 424 cgtaagcttaggctgcaatttgaatgggagcaaagaaagctccataaaggatgtttgaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtaagcttaggctgcaatttgaatgggagcaaagaaagctccataaaggatgtttgaat 683

                                                                       
Query: 484 ccatcagtaaaattggaaaacagagagtagattgaaataaagaattagatctgtgctaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatcagtaaaattggaaaacagagagtagattgaaataaagaattagatctgtgctaga 743

                           
Query: 544 ctggcagaaaccagct 559
           ||||||||||||||||
Sbjct: 744 ctggcagaaaccagct 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_e15.g1 MSMg01no409_e15.g1 CHROMAT_FILE:
MSMg01no409_e15.g1 PHD_FILE: MSMg01no409_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:35 2005
         (593 letters)



>mm_chr4_54114765_54115757
          Length = 993

 Score =  706 bits (365), Expect = 0.0
 Identities = 380/385 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttcccaggacttacacactgggatcaaatttctgacttgaaattttggaaacatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcttcccaggacttacacactgggatcaaatttctgacttgaaattttggaaacatgc 326

                                                                       
Query: 61  ccaaaccacagtgttgactaaacacctaaggcattgcttcaaattcacaagtattcccta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaaccacagtgttgagtaaacacctaaggcattgcttcaaattcacaagtattcccta 266

                                                                       
Query: 121 atctgcattcattctaggtatttatttgagtcctattgaacaacaacaaaagactattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgcattcattctaggtatttatttgagtcctattgaacaacaacaaaagactattaa 206

                                                                       
Query: 181 aactaacttgaaaacaagagtggtttaacatatggtgctggtcaaactggatagctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aactaacttgaaaacaagagtggtttaacatatggtgctggtcaaactggatagctacag 146

                                                                       
Query: 241 ctcagaaaatgattctagatccttacctcttaccctgcacagaagtcaactccaaatgca 300
           ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 145 ctcagaaaatgaaactagatccttacctctcaccctgcacagaagtcaactccaaatgca 86

                                                                       
Query: 301 ttaaaggcttcaatataagtcccaataccttgaaagaattgaagaagaaagtagagcata 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 85  ttaaaggcttcaatataagtcccaataccttgaaaggattgaagaagaaagtagagcata 26

                                    
Query: 361 tgctctcactgacaagcccgggaaa 385
           |||||||||||||||||||||||||
Sbjct: 25  tgctctcactgacaagcccgggaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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