BAC Information

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BAC

Clone NameMSMg01-409G14
Chromosome4 (Build37)
Map Location 123,130,457 - 123,271,454
singlet/doubletdoublet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409G14.T7 (MSMg01no409_g14.b1)MSMg01-409G14.TJ (MSMg01no409_g14.g1)
ACCAG506903AG506904
length779781
length of high quality
(start - end)		555 (47 - 601)485 (76 - 560)
definitionCHROMAT_FILE: MSMg01no409_g14.b1 PHD_FILE: MSMg01no409_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:46 2005CHROMAT_FILE: MSMg01no409_g14.g1 PHD_FILE: MSMg01no409_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,130,457 - 123,130,920)(123,270,970 - 123,271,454)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCTAGTTCACAATACATACATAGAACATTTCTGGTCCCCCC
CTAAAATAAATTAAGAAATAAAGAAATATAGAGACAGACAGACAGACAGA
TAGCAGTCAAAATAGTCTACACTTTTAATTCAAGCACCTGGGATTAAGAA
GCAAGGGGTCTCTGTAAATATGAGGTCCCCTGGTCTATATAGTGAGTTCC
AGGAAAGCCAGGGCTACATAGTGAGACCCTGCCTCAAATAAAAACAAAAC
AAAAACTCAAACAAACAAAATACTCAGAATGTAGTATTTAAATTGTATAT
ATTAATTAAAAATAATTAACATCAAAACAAATGGAATATTTTTGAACTAT
ATTAATAAAGTAGCCAAATTCAATTAATTAGTAATTTGGCATTTAATAAG
AACAGAAATTATGCAACATGCCAAGGACTAAAGATAATTAAGATAAAGTC
TCTGGTCTTAACAAAATTAAGGTTGCAAATCAGTATAGGCAGAGGAAAAC
ATAACATAACTGTATAAAAGCCCTGAGTGCTGTATTACTACTAAAAGCAC
ATCCTAANGAAAGTCAAAACCTTTCTTCTTTCTTTCTTTTTTCCCTTCTT
CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTC
TTTCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCAAAGAAAGTGGGAG
AGGATTTGATGAGAGGGTCCTTCCTAAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCATTAAATTCCTCCTAAAATCT
GAAGAATAAGAAACAGATATGTGTTATATTGTGCTCCTGGCAAAGTCACT
TGGGTTTCTCCTTGCCTTTTTGTCTGGCATACTCCTTGAATGGGTACTCA
GCATTTTCTTCTTTTTCCTGTTCTGTACTTCACCCCTCCGGAGCAAATAG
TTGCTGCATTTGGCAACATTCTTTGCCCAAAAAAATTCTTAATACATGAG
GGCCACTGAGGTTTATTTTTAAATTCTCCTCCTGATTGAGGGAAAGCAGC
TGGCCTCACTGAATTCCCCTGTGGAGGCTTCCAGCTGCCCAGACTTCCCT
CATCTTTACCAGGCACATTCCATCAGTCTTAAGGCCTGACCCTCAGGAGT
GAAATGTTCTTTTGGAATCTCTTCTTGCAGCAAGGCCAGGGCATGAATTA
GGTGTCTGGTTGAGAAGCTGGAGGAACAGGTGGTCTGCGACTTTAACATA
AAACTTCCGACTGGAAAGGTGTTTTTGTAATCCATACTTACCAGAAGTTT
CCATCAATGGGCCTGTCCTTTTAATCTCCTCCCCTTCTTAATATAAGGCC
TTACTATGTAAACCTTGCTTGTTTTTGATATCTCTTGGGGGGCTTTTAAT
CTCCCTGTCCTCTGCCTCTCCACTTGCTACAATTTTATTGGGTCACTTCT
ATATCCTATATATTAACTAATATCTTTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_g14.b1 MSMg01no409_g14.b1 CHROMAT_FILE:
MSMg01no409_g14.b1 PHD_FILE: MSMg01no409_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:46 2005
         (555 letters)



>mm_chr4_123130166_123131120
          Length = 955

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 92  acagacagacagatagcagtcaaaatagtctacacttttaattcaagcacctgggattaa 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acagacagacagatagcagtcaaaatagtctacacttttaattcaagcacctgggattaa 351

                                                                       
Query: 152 gaagcaaggggtctctgtaaatatgaggtcccctggtctatatagtgagttccaggaaag 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagcaaggggtctctgtaaatatgaggtcccctggtctatatagtgagttccaggaaag 411

                                                                       
Query: 212 ccagggctacatagtgagaccctgcctcaaataaaaacaaaacaaaaactcaaacaaaca 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccagggctacatagtgagaccctgcctcaaataaaaacaaaacaaaaactcaaacaaaca 471

                                                                       
Query: 272 aaatactcagaatgtagtatttaaattgtatatattaattaaaaataattaacatcaaaa 331
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaatactcagaaagtagtatttaaattgtatatattaattaaaaataattaacatcaaaa 531

                                                                       
Query: 332 caaatggaatatttttgaactatattaataaagtagccaaattcaattaattagtaattt 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 caaatggaatatttttgaactatattaataaagtagccaaattcaattaattagtaattt 591

                                                                       
Query: 392 ggcatttaataagaacagaaattatgcaacatgccaaggactaaagataattaagataaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggcatttaataagaacagaaattatgcaacatgccaaggactaaagataattaagataaa 651

                                                                       
Query: 452 gtctctggtcttaacaaaattaaggttgcaaatcagtataggcagaggaaaacataacat 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gtctctggtcttaacaaaattaaggttgcaaatcagtataggcagaggaaaacataacat 711

                                                       
Query: 512 aactgtataaaagccctgagtgctgtattactactaaaagcaca 555
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aactgtataaaagccctgagtgctgtattactactaaaagcaca 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_g14.g1 MSMg01no409_g14.g1 CHROMAT_FILE:
MSMg01no409_g14.g1 PHD_FILE: MSMg01no409_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:46 2005
         (485 letters)



>mm_chr4_123270770_123271654
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 480/485 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcattaaattcctcctaaaatctgaagaataagaaacagatatgtgttatattgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcattaaattcctcctaaaatctgaagaataagaaacagatatgtgttatattgtgct 626

                                                                       
Query: 61  cctggcaaagtcacttgggtttctccttgcctttttgtctggcatactccttgaatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctggcaaagtcacttgggtttctccttgcctttttgtctggcatactccttgaatgggt 566

                                                                       
Query: 121 actcagcattttcttctttttcctgttctgtacttcacccctccggagcaaatagttgct 180
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 565 actcagcattttcttctttttcctgttctgttcttcacccctcgggagcaaatagttgct 506

                                                                       
Query: 181 gcatttggcaacattctttgcccaaaaaaattcttaatacatgagggccactgaggttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatttggcaacattctttgcccaaaaaaattcttaatacatgagggccactgaggttta 446

                                                                       
Query: 241 tttttaaattctcctcctgattgagggaaagcagctggcctcactgaattcccctgtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttaaattctcctcctgattgagggaaagcagctggcctcactgaattcccctgtgga 386

                                                                       
Query: 301 ggcttccagctgcccagacttccctcatctttaccaggcacattccatcagtcttaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcttccagctgcccagacttccctcatctttaccaggcacattccatcagtcttaaggc 326

                                                                       
Query: 361 ctgaccctcaggagtgaaatgttcttttggaatctcttcttgcagcaaggccagggcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgaccctcaggagtgaaatgttcttttggaatctcttcttgcagcaaggccagggcatg 266

                                                                       
Query: 421 aattaggtgtctggttgagaagctggaggaacaggtggtctgcgactttaacataaaact 480
           |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct: 265 aattaggtgtctggttgagaagctggaggaacaggtggcctgtgactttagcataaaact 206

                
Query: 481 tccga 485
           |||||
Sbjct: 205 tccga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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