Query= MSMg01no409_k04.b1 MSMg01no409_k04.b1 CHROMAT_FILE:
MSMg01no409_k04.b1 PHD_FILE: MSMg01no409_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:04 2005
(517 letters)
>mm_chr4_97815054_97815970
Length = 917
Score = 891 bits (461), Expect = 0.0
Identities = 497/517 (96%), Gaps = 15/517 (2%)
Strand = Plus / Minus
Query: 4 ggaattcactgtgatttgcc---aagaggccagatttagatggttctgtcttgaaggaca 60
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggaattcactgtga---ggcgggaagaggccagatttagatggttctgtcttgaaggaca 618
Query: 61 gaaactttgcagcattttggcaattattactgaaaaagcacccagagagaaagtataata 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 617 gaaactttgcagcattttggcaattattactgaaaaagtgcccagagagaaagtataata 558
Query: 121 gttttaaacataattaggattcaattttaaggggaaatcataaacttcccatttaatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttttaaacataattaggattcaattttaaggggaaatcataaacttcccatttaatgct 498
Query: 181 aatgtttgatctactgtgaagcagaaaagggagaagctattacaaatttgctaataccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aatgtttgatctactgtgaagcagaaaagggagaagctattacaaatttgctaataccat 438
Query: 241 caaaacttacaaagtgataaaatgaggctccatgaagagaggtattcatcccaagtatta 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 caaaacttacaaagtgataaaatgaggctccatgaagagaggcattcatcccaagtatta 378
Query: 301 gccacagtaatagctgtgaatatggacgagagaaagagattggttctgagaatcagtgag 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 377 gccacagtaatagctgtgaatatggacgagagaaagagattgattctgagaatcagtgag 318
Query: 361 gtacatcagactgctttatctgcacgctctatggtgacccttggttgctccctgctctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtacatcagactgctttatctgcacgctctatggtgacccttggttgctccctgctctga 258
Query: 421 gccaggctgactgagctctagcccaggggatgcagcctgaggaacctccaccaccatgaa 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 gccaggctgactgagctctagcccaggggatgca---------acctccaccaccatgaa 207
Query: 481 aatatttacattatctcacctactaaaaatcatgatt 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatatttacattatctcacctactaaaaatcatgatt 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_k04.g1 MSMg01no409_k04.g1 CHROMAT_FILE:
MSMg01no409_k04.g1 PHD_FILE: MSMg01no409_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:04 2005
(479 letters)
>mm_chr4_97680274_97681149
Length = 876
Score = 895 bits (463), Expect = 0.0
Identities = 474/479 (98%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 1 atggaactctcaagaaaatgtggaacagaattccaaaatacagttgaggatcagctgttg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atggaactctcaagaaaatgtggaacagaattccaaaatacagttgagaatcagctgttg 260
Query: 61 tcatccaagtaagaaaacctgcagaaaatttgtggagcagttacttaaaaaaaaattaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatccaagtaagaaaacctgcagaaaatttgtggagcagttacttaaaaaaaaattaac 320
Query: 121 actaaagtacgagaggtattttcatttaaaccatccaataatgcttgttgacaatctaat 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 actaaagtacgagaggtattttcatttaaaccatccagtaatgcttgttgacaatctaat 380
Query: 181 ctttaaaaaaaaaaaaggagtaaaataaaaagataaaaggtacattagaaagaatatgcc 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaaaaaaaaa---ggagtaaaataaaaagataaaaggtacattagaaagaatatgcc 437
Query: 241 tttctaggatagaccatttttattgtcaatattcctttgaagtcatagtttattagctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttctaggatagaccatttttattgtcaatattcctttgaagtcatagtttattagctac 497
Query: 301 tattctggataatctttgcagataaatacaacagagaatgtgttccatactgcactaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tattctggataatctttgcagataaatacaacagagaatgtgttccatactgcactaaca 557
Query: 361 ttggttcttgatcactttgaatttacagagacttcatttatggtttgttttgtttttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttggttcttgatcactttgaatttacagagacttcatttatggtttgttttgtttttgtt 617
Query: 421 ttcctctctctagcaccaatagctgcaggaaccggccccaatttttctctctctgattt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttcctctctctagcaccaatagctgcaggaaccggccccaatttttctctctctgattt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 876
Length adjustment: 10
Effective length of query: 469
Effective length of database: 866
Effective search space: 406154
Effective search space used: 406154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
