TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAATGCCATTCCAAATACCTCATCGTACTGCTATTTATTGTGA
ATGAATATTTATAGCATTCTCTGTAACTATTATCCAATCAAGGAAACTGA
ACGTAAGTTGCTGATAAATGGCTTTAGTTTTCACTCATGAAATAAGTTGA
ACAAGATTTTCATTACAGTTTTTCTTATTTGGATCATTCCTTCAAGTTCA
GAAGCAATTATGAAAGTGGTTTATTTGTGGAATAAACAAAACAGAAAATG
TTTCTATATAACAGCACAGGGGTTTAATAAGGTAGAAATACTTTCAATTT
AATAGTTTTACACACTTAATGTATTGCTCCAGAAAACAATTAAAGACCTG
GGATGGTCATCTAGTCCCATTGTAATGAAAACGTGATAAGTAAAAGAATT
CACACATGGCTAGAGAGCCATTAGAAGAGTATTTTCTACTGTAATAATGC
TGTTACTTTTTTTTTTAACTTTACACTCACTTCATTATTGGCTCACATTG
GAGATAAGAGAAGAGCANAAGATGACTTTACTGGGGAAAAGTACAACTGT
TCACACTTGTTCCCCTCATCTAAATATTTGTTGGGTTGCAAAAGGTAAGT
CTCTCAGGGAACAATGTATTAAGCAATTATCACCTCTGGAAGACGGCAGG
AGGTCTTCACCATAGACTTGTCCACCCAGGAATGACGAACCTGCATGCCA
CCTGGTCCATTCCCCCACCATTTGTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAGGAGAA
CATCCCTCATTGTGTGAGGAGTGAACATCTNCTGATCGCTGCGTCTCGAA
TGACAGATACGGNNNNNNNTTTTTTTTTTNNNNNNNNANNNAACNANNAA
AACCTCCCGGGGGAATATTCCAGAAGGNTCCCCCCCCGGGTAAAGAGACC
CGCGGCCCCCTTTTTCTAGGCGGAAACTNTTNNNNNANNNNCNNNAANCG
AAGAAAAANNNNNNNNNNCTAANNNNAAGAAAGCTCCAGACACTAAAGGT
ATCCGGGGGGGAGGGGAACAAACNTCTTTAAATCCCCACAAAATTTCCGG
GAGGAGGGGGNNNGGGGGGGGGGGGNNNNTCTANATNNACTCTNNNNNNN
NNNNNNNNNNNNAGANNAAAGTAGACGGATCAGTGGAGGGGNNNNNNNNG
GNNNNNGNNGGGGGGGGGGGGTTAGGGGNNNNTTTTNTTTTTTTTTNNTT
NNTTTTTTTTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTTNNTT
TTTTTTTNTTTTTTTTCTTCNCCTTTTTNTNTTTTTTGGCTGGGAAAAAA
AAGAAAAAAT

Query= MSMg01no409_m14.b1 MSMg01no409_m14.b1 CHROMAT_FILE:
MSMg01no409_m14.b1 PHD_FILE: MSMg01no409_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:16 2005
         (521 letters)



>mm_chr4_23416525_23417449
          Length = 925

 Score =  942 bits (487), Expect = 0.0
 Identities = 513/524 (97%), Gaps = 4/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   acctcatcgtactgctatttattgtgaatgaatatttatagcattctctgtaactattat 61
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 725 acctcatcgtactgctatttattgtgaatgaatatttatagtattctctgtaactattat 666

                                                                       
Query: 62  ccaatcaaggaaactgaacgtaagttgctgataaatggctttagttttcactcatgaaat 121
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 665 ccaatcaaggaaactgaacgtaagttgctggtaaatggctttagttttcactcatgaaat 606

                                                                       
Query: 122 aagttgaacaagattttcattacagtttttcttatttggatcattccttcaagttcagaa 181
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aagttgaacaatattttcattacagtttttcttatttggatcattccttcaagttcagaa 546

                                                                       
Query: 182 gcaattatgaaagtggtttatttgtggaataaacaaaacagaaaatgtttctatataaca 241
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 545 gcaattatgaaagtggtttatttgtggaataaataaaacagaaaatgtttctatataacg 486

                                                                       
Query: 242 gcacaggggtttaataaggtagaaatactttcaatttaatagttttacacacttaatgta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcacaggggtttaataaggtagaaatactttcaatttaatagttttacacacttaatgta 426

                                                                       
Query: 302 ttgctccagaaaacaattaaagacctgggatggtcatctagtcccattgtaatgaaaacg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgctccagaaaacaattaaagacctgggatggtcatctagtcccattgtaatgaaaacg 366

                                                                       
Query: 362 tgataagtaaaagaattcacacatggctagagagccattagaagagtattttctactgta 421
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 365 tgataagtaaaagaattcacacatggctagagagccattagaacagtattttctactgta 306

                                                                       
Query: 422 ataatgctgttac----ttttttttttaactttacactcacttcattattggctcacatt 477
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ataatgctgttacttttttttttttttaactttacactcacttcattattggctcacatt 246

                                                       
Query: 478 ggagataagagaagagcanaagatgactttactggggaaaagta 521
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 ggagataagagaagagcaaaagatgactttactggggaaaagta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 925
Length adjustment: 10
Effective length of query: 511
Effective length of database: 915
Effective search space:   467565
Effective search space used:   467565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)