BAC Information

Click to search

BAC

Clone NameMSMg01-409N14
Chromosome4 (Build37)
Map Location 147,410,709 - 147,410,916
singlet/doubletsinglet
Overlap geneClcn6
Upstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa
Downstream geneMthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409N14.T7 (MSMg01no409_n14.b1)MSMg01-409N14.TJ (MSMg01no409_n14.g1)
ACCAG507236AG507237
length794799
length of high quality
(start - end)
491 (47 - 537)215 (77 - 291)
definitionCHROMAT_FILE: MSMg01no409_n14.b1 PHD_FILE: MSMg01no409_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:21 2005CHROMAT_FILE: MSMg01no409_n14.g1 PHD_FILE: MSMg01no409_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGAGTAACATCTAATGGCTGAGAAGCACCTAAAGAAATG
TTCAACATCCTTAGTCATCAGAGAAATGAAAATCAAAATGACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGTTAATATAAAAAACTCAGGTGACAGC
AGATGCTGGAGAGGATGGTGAAAAAGAGGAGCACTCATCCATTGCTGGTG
GAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTTCTTA
GAAAATTAGAATGAGGACCCAGTTATACCACTCCTGGGCATATACCAAAA
GATGCTCCAACATATAACAAGGACACATGCTCTACTATGTTCATAGCAGC
CTTATTTAGAATAGCCAAAAGCTGGAAAGAACCCAGATGTCCTTCAACAG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTANAAACGATGAATTCATGAAGTTCTTAGGCAAATGGATGGAACT
AGAAAATATCATCCTGATTGAGGTAACCCAGACCCACAAAAAACACATGG
GATGCACTCCCTGATAAGTGGAAATAACCCACAAACCTTGTAGTACCCTA
AAAACAATTCCCGACCCTATGAAGTTCTTAAAAAGGAAACCCCAAGGGGG
AACCCTCCCTCCTCTTTATAAGGAAAAAAAATACTCCTGTGGTAAAAAGC
GGCCCGGGGTTAAAACACAATTTATAGTTCCCCATAATCTCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCA
AACTCAGAAATCCACCTGCCTCTACCTCCCAAGAGCTAGGATTAAAGGTG
TGTGCCACCACGCCCCAGCTGTTTTATGTTCATAAGAGCAAATTCATTCA
GACACTTAATCAGGGAAGTCTGCTCAGCGAACATCTAAGGACCAGCCCTC
TGAGCAGCTTTTTGTATTTATTTGGGATTGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNNNNNNC
TTTTNNNNNTTTTTGTTTTTCTTTTTTTTTTTNTTNNTTNTTTTTTTTTN
TTTGTTTTTTTTTTTTTCCNCCCTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTCTTTTCTTTTCGTCTTTTCTCTCTTCCTTCCCTTGGTTCT
CCGTGTCTCTCTGCTCTGGTTTTTTTTTTTCTTTCCTCTGCTTTCTCTCC
TTCTTTTTTCCTCTTCTTTTTTTTCTCTTGTTTTCCTTTTGCTTCTGGTT
TCGTTTGTTCCTCTTTTTTTGGTTTCCCTCGTTGTTTCCTTTTTGCTTTC
GCCTCTGTTTTGTGCTGTTTTTTTCCCTTTTCTGTCTTTCTTTTTTTTCG
CTCCCTTTTTTTTGTTTTTCTGCTTTGTTTTTCCCCCTTCTCTTTTTTCT
TTTTTTTTTTTTGCCGTTTCCTTTTCGTCTCGGTCGTTCGTTTCGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_n14.g1 MSMg01no409_n14.g1 CHROMAT_FILE:
MSMg01no409_n14.g1 PHD_FILE: MSMg01no409_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:22 2005
         (215 letters)



>mm_chr4_147410406_147411018
          Length = 613

 Score =  352 bits (182), Expect = e-102
 Identities = 203/210 (96%), Gaps = 2/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctcaaactcagaaatccacctgcctctacctcccaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 511 actctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaagagc 452

                                                                       
Query: 61  taggattaaaggtgtgtgccaccacgccccagctgttttatgttcataagagcaaattca 120
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 451 taggattaaaagtgtgtgccaccacgccccaactgttttatgttcataagagcaaattca 392

                                                                       
Query: 121 ttcagacacttaatcagggaagtctgctcagcgaacatctaaggaccagccctctgagca 180
           ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 391 ttcagacac-taatcagggaagtctgctcagcgtacatctaagggccagccctctgagca 333

                                         
Query: 181 gctttttgtatttatttgggattggggggg 210
           ||||||||||||||||||||| ||||||||
Sbjct: 332 gctttttgtatttatttggga-tggggggg 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 613
Length adjustment: 9
Effective length of query: 206
Effective length of database: 604
Effective search space:   124424
Effective search space used:   124424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)