Query= MSMg01no409_o16.b1 MSMg01no409_o16.b1 CHROMAT_FILE:
MSMg01no409_o16.b1 PHD_FILE: MSMg01no409_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:27 2005
(254 letters)
>mm_chr4_119752337_119752990
Length = 654
Score = 456 bits (236), Expect = e-133
Identities = 254/270 (94%), Gaps = 16/270 (5%)
Strand = Plus / Plus
Query: 1 ttggccccaggatcctcccacagcctatggcctttgccagagtagaattttcaaaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttggccccaggatcctcccacagcctatggcctttgccagagtagaattttcaaaatcac 244
Query: 61 ttggcttgggtggccaaaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---- 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttggcttgggtggccaaaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 304
Query: 117 ------------atttaaagcctcagaaaaccatacaggactccagcctcctgccccatg 164
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgtgtgtgtgtatttaaagcctcagaaaaccatacaggactccagcctcctgccccatg 364
Query: 165 aggacagagcagaagttggaggaaaactgagaactgctcctgatggcatggcctgtctct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggacagagcagaagttggaggaaaactgagaactgctcctgatggcatggcctgtctct 424
Query: 225 aggggcttttagaactccaaagttgtcaaa 254
||||||||||||||||||||||||||||||
Sbjct: 425 aggggcttttagaactccaaagttgtcaaa 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no409_o16.g1 MSMg01no409_o16.g1 CHROMAT_FILE:
MSMg01no409_o16.g1 PHD_FILE: MSMg01no409_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:28 2005
(409 letters)
>mm_chr4_119912051_119912859
Length = 809
Score = 768 bits (397), Expect = 0.0
Identities = 406/409 (99%)
Strand = Plus / Minus
Query: 1 tcccaccctctctgcagctgctctcccctcctgggtgagccaccagctcatgccaaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcccaccctctctgcagctgctctcccctcctgggtgagccaccagctcatgccaaccca 550
Query: 61 agggcttggctgccagagccaggctgggctgaggagttcagggtgggagccctatgtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agggcttggctgccagagccaggctgggctgaggagttcagggtgggagccctatgtttc 490
Query: 121 ccaaccccctagagggaggcgctcatgggcagatgggagtctgtctacctggtggtgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccaaccccctagagggaggcgctcatgggcagatgggagtctgtctacctggtggtgttc 430
Query: 181 agggagtaccacctgctcttggtcctggtgctccctcaagctctgccctcaacctagaca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agggaataccacctgctcttggtcctggtgctccctcaagctctgccctcaacctagaca 370
Query: 241 gctggtcaggtttgttcccactcaggagatgcagatacggacccagaggtggaggagacc 300
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gctggtcaggcttggtcccactcaggagatgcagatacggacccagaggtggaggagacc 310
Query: 301 ttggagtctctgggtctaggactcagagagggtgggaaagacctgtgttaacatctttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttggagtctctgggtctaggactcagagagggtgggaaagacctgtgttaacatctttat 250
Query: 361 gatgggggtaatgtgaccagggaggagaaagggggtgtggcttctcagg 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gatgggggtaatgtgaccagggaggagaaagggggtgtggcttctcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
