Query= MSMg01no410_a23.b1 MSMg01no410_a23.b1 CHROMAT_FILE:
MSMg01no410_a23.b1 PHD_FILE: MSMg01no410_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:40 2005
(572 letters)
>mm_chr4_152935756_152936738
Length = 983
Score = 1009 bits (522), Expect = 0.0
Identities = 561/580 (96%), Gaps = 13/580 (2%)
Strand = Plus / Plus
Query: 5 gaattcagcaaccctattctaatcaccatccttgcctggccaatcaacgcatagcagaat 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaccctaatctaatcaccatccttgcctggccaatcaacgcatagcagaat 264
Query: 65 ctttgtggcttccctggaagcccatggatgtctgggagccaagccggatgcccagcat-c 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 265 ctttgtggcttccctggaagcccatggatgtctgggagccaagccggatgcccagc-tac 323
Query: 124 caagattccgctggaccacagatctatgtggaga-----aagagccagcttctactgagt 178
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 caagactccgctggaccacagatctatgtggagaggagaaagagccagcttctactgagt 383
Query: 179 ctgtagaatcctgaatggaaccagaaggaagttgggacttgcggcacaatccgtgctccc 238
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 384 ctgtagaatcctgaatggaaccagaaggaagttgggactttcggcacaatctgtgctccc 443
Query: 239 atctgcagccaggtccagcagtgctgtgctcccatccagcagtgctgtgctcccatctgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atctgcagccaggtccagcagtgctgtgctcccatccagcagtgctgtgctcccatctgc 503
Query: 299 agccaggtccaaatgttgaccttcacagccaggaaacactcagttcctagtcagatacaa 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 agccaggtccaaatgttgaccttcacagccagcaaacactcagttcctagtcagatacaa 563
Query: 359 agaaaccttgagcgtgacagtgaagccaggcataccagcacccgagggacacaagacaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaaccttgagcgtgacagtgaagccaggcataccagcacccgagggacacaagacaac 623
Query: 419 ctcctgattcttactatcagatttgcagcttcaatacagtggctatgcctcaac------ 472
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcctgattcttgctatcagatttgcagcttcaatacagtggctatgcctcaacacccac 683
Query: 473 ctttaaagtgagctttgtcctgaaagcccagtgaaagctgctcttcccagacaggactct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttaaagtgagctttgtcctgaaagcccagtgaaagctgctcttcccagacaggactct 743
Query: 533 atcaagcactgcataatgggtatcttctctctccattcgt 572
||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcaagcactgcataatgggtatcttctctctccattcgt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 983
Length adjustment: 10
Effective length of query: 562
Effective length of database: 973
Effective search space: 546826
Effective search space used: 546826
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_a23.g1 MSMg01no410_a23.g1 CHROMAT_FILE:
MSMg01no410_a23.g1 PHD_FILE: MSMg01no410_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:41 2005
(254 letters)
>mm_chr4_153070519_153071178
Length = 660
Score = 422 bits (218), Expect = e-122
Identities = 241/252 (95%), Gaps = 6/252 (2%)
Strand = Plus / Minus
Query: 1 ttcacggtgctgaagcatcctctaagcctcaatcccttaacattgcatgacgtttctgtt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttcacggtgctgaagcatcccctaagcctcaatcccttaacattgcatgacgtttctgtt 393
Query: 61 caccccaaggtttgccaagggggatggggcagcgat------ccccccctgcagtgttta 114
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 392 caccccaaggtttgccaagggggatggggcagcgattcccccccccccccgcagtgttta 333
Query: 115 aagggtaccggtgcatgaaatgagggctgctacatcccaggaagcctgtaattatcatta 174
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagggtaccggcgcatgaaatgaaggctgctacatcccaggaagcctgtaattatcatta 273
Query: 175 aaatgcattgtgcctgtgattagacaagccccttgctctgatggggtcgctgtgagggag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 aaatgcattgtgcctgtgattagacaagccccttgctctgatggggtcgctgtaagggag 213
Query: 235 gatggagttggt 246
||||||||||||
Sbjct: 212 gatggagttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 660
Length adjustment: 9
Effective length of query: 245
Effective length of database: 651
Effective search space: 159495
Effective search space used: 159495
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
