BAC Information

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BAC

Clone NameMSMg01-410M13
Chromosome4 (Build37)
Map Location 109,044,846 - 109,045,101
singlet/doubletsinglet
Overlap geneEps15
Upstream geneLOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4
Downstream geneLOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410M13.T7 (MSMg01no410_m13.b1)MSMg01-410M13.TJ (MSMg01no410_m13.g1)
ACCAG507952AG507953
length790772
length of high quality
(start - end)
240 (83 - 322)---
definitionCHROMAT_FILE: MSMg01no410_m13.b1 PHD_FILE: MSMg01no410_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:37 2005CHROMAT_FILE: MSMg01no410_m13.g1 PHD_FILE: MSMg01no410_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGAGAATG
CGCGGAATTCAGACTGTTATCTTTTAGAGGAATCTGGCATATGGTCTACA
TTATAAACTAGGTGCGATAGTCTTGCGCAGACCACAAATATTCAGTTATA
GAGGTGTTCCTCAAAATTTACATCAGTGGAAAATACCACCTGCTGGGCAA
GTAACTCTTATTAATGAATACAGTAAGGAGATAATTTAAGAATACAAAAA
AAAAATTAAACCCAACCCAACCTAAACCAAACCAATTACTCTTCTAAGGA
GGTAATCTTCACTTAAGATTATTGATGTTTAAATAGCTGTGTAAAATCCC
TGTCAGTTAATTGTGCCTTTCTTGGTCTAGTTTACCACAGAAATAATGCT
GCCAAACTCCAAACAAAAACAAGCTGAATATTTTTAAAATATCCAGAGTA
TACATTTATTTTTATTTTATGTGAGTGTTTGAGCTACATGTATATATATC
TATGTGCTCTTGCTTGTGTGCGTGTGTGCGTGCGTGCGTGTCGTTTCTCT
CCGTAGGCCCTATTCGCTCTCCCCCCCTTTTCCCTTTCTTCGTCTTCCAT
ATCACACTTCTTTTCATACCTTTCCTTTTCTTTTCCCTTCTCTCCCCTAG
CTCTTATTTTCCTTCTCTTTTTATCTCCCTTATTTTCACCCTTCTCTTCC
TCCTCTCTTTGTCCCCTTTTCTCCTACTTTTCTCTTTCACCTCTTTTTCT
CTTCTTCACTTCCTTATATTCGCCTTTCTTCTCTTTTTTT
NTCGATGATANTGGTAGCCCTGGCGGCCGCCTGGTTTCCCACTTTAAGGG
GACCCAAAGAAAGTTTCCCCGAAATTCCATGGGGGTCTGAATGGAGGCAG
GAATCCCAAGGAATGAACCCTGGGGAAGGTAATTCCGGTAACCTCTCAAA
TTTGCCAATAAAAATTGGCTGGAAAAAACTTTCTTACCCAAGGGGCCTTT
GTACCCAGTTGGCATAAACCCCCTGGGAACAGCCCACCAGAACTGAGAAC
CCCCTTGTTGCCCAGGCCTCCAACTGATAACCATTTGAAACCTTCTGTGA
ATCAGGAACACTTGAACTTGCTGATCCCGGGAAAAAACCGCCCTGGACAG
ATGCCCAAACCAAAGGGACCTGTTCCAGCTGGCCTTTCCAGAGTTCAAGT
ACAAACGGTTGTTGAGGATCGCTCTGGAGTCTGCAGAATTGAGGAGGCTA
CAGTGGGGCCTTTGCATGTCTCACACTTCCAGCTCTGGTTCTGCCATTTG
TCTCGCGTTGCATCTACTAATCCCGCTATCTTCCTTCCTCTTCCCCATAA
TTTTTTCTTGCGGTCCACTTACCCCATCACTTTTGTCTCGTGTCCCTTCC
CCCTACTTAATTCCGTTTACCCCTGCCCCCCTTTCCCTGTCTCCTTTCCC
AATACCACTAGCCTCTCCTTCCCCCTTTGATCTTCCCTGTTCTTCCGTTT
TCTTTATTCTCTTTCCCACTCGCTTCGTCCTTTCTTCCCTTTACCTTTCT
CTCTCTCCTACCTTCTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_m13.b1 MSMg01no410_m13.b1 CHROMAT_FILE:
MSMg01no410_m13.b1 PHD_FILE: MSMg01no410_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:37 2005
         (240 letters)



>mm_chr4_109044729_109045368
          Length = 640

 Score =  402 bits (208), Expect = e-117
 Identities = 236/258 (91%), Gaps = 21/258 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggcatatggtctacattataaactaggtgcgatagtcttgcgcagaccacaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 373 tctggcatatggtctacattataaactaggtgcgatagtcttgcggagaccacaaatatt 314

                                                                       
Query: 61  cagttatagaggtgttcctcaaaatttacatcagtggaaaataccacctgctgggcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagttatagaggtgttcctcaaaatttacatcagtggaaaataccacctgctgggcaagt 254

                                                                       
Query: 121 aactcttattaatgaatacagtaaggagataatttaagaatacaaaaaaaaaattaaa-- 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  
Sbjct: 253 aactcttattaatgaatacagtaaggagataatttaagaatacaaaaaaaaaa--aaaaa 196

                                                                       
Query: 179 -----------------cccaacccaacctaaaccaaaccaattactcttctaaggaggt 221
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaaaaacccaacccaacccaacccaacctaaaccaaaccaattactcttctaaggaggt 136

                             
Query: 222 aatcttcacttaagatta 239
           ||||||||||||||||||
Sbjct: 135 aatcttcacttaagatta 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)