Query= MSMg01no410_n11.b1 MSMg01no410_n11.b1 CHROMAT_FILE:
MSMg01no410_n11.b1 PHD_FILE: MSMg01no410_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:41 2005
(358 letters)
>mm_chr4_94855554_94856311
Length = 758
Score = 621 bits (321), Expect = 0.0
Identities = 349/359 (97%), Gaps = 4/359 (1%)
Strand = Plus / Plus
Query: 1 cctaaccttctaccggtttccactttgagctgttctccgccccatcacgaccagctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaccttctaccggtttccactttgagctgttctccgccccatcacgaccagctctct 260
Query: 61 ctggtcagaaacaatgcagcccacatgcattgttcctgggacaggctgagtgaatcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtcagaaacaatgcagcccacatgcattgttcctgggacaggctgagtgaatcttgt 320
Query: 121 gtgccggtgggtctttgtacacccagggtcactttgcttcaaaggtaccattccccttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgccggtgggtctttgtacacccagggtcactttgcttcaaaggtaccattccccttcc 380
Query: 181 tgcccacaggccctcatttacagtgtggctacttaattggatagatccctgtacaaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcccacaggccctcatttacagtgtggctacttaattggatagatccctgtacaaacta 440
Query: 241 tttc-ct-tgttttccttgttcaaatatcatcaggatggctgatcagagcatcctaccat 298
| || || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 a--cactctgaggtccttgttcaaatatcatcaggatggctgagcagagcatcctaccat 498
Query: 299 gtgtgtagctttctgcgctcatagccctctgtatgactgcgcacatcatgagcctctca 357
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgtgtagctttctgcgctcagagccctctgtatgactgcgcacatcatgagcctctca 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_n11.g1 MSMg01no410_n11.g1 CHROMAT_FILE:
MSMg01no410_n11.g1 PHD_FILE: MSMg01no410_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:42 2005
(497 letters)
>mm_chr4_95066907_95067803
Length = 897
Score = 930 bits (481), Expect = 0.0
Identities = 493/497 (99%)
Strand = Plus / Minus
Query: 1 ccctgaaacaggggctgaatggttcacaattttgtattcccgaagtttggcccagagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccctgaaacaggggctgaatggttcacaattttgtattcccgaagtttggcccagagtgg 638
Query: 61 gtgctccctgaatttgaaatgaaataaagctgacttgtgcaaagacaatagacaatgagt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 637 gtgctccctgaatttgaaatgaaataaaactgacttgtgcaaagacaatagacaatgagt 578
Query: 121 attgaaccgcaaggacttgagaaaatgatttagcatgattgaatgttgtagacgtagaca 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 577 attgaaccgcaaggacttgagaaaatgatttagcatgcttgaatgttgtagacgtagaca 518
Query: 181 tcatctcacacagaagatactccgtcagactggggcaaagcaaagtcaagaatgatgctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 tcatctcacacagaagatactccgtcagactggggcaaagcaaagtcaagaatgatgcag 458
Query: 241 acaataactggggacaaaaagaaaaagaaacagaaggaaaagagaataaaaaagaaaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acaaaaactggggacaaaaagaaaaagaaacagaaggaaaagagaataaaaaagaaaaca 398
Query: 301 taggggaaagacactaagtaaacttcaaaggaagacctaaggggcctaacacctgagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taggggaaagacactaagtaaacttcaaaggaagacctaaggggcctaacacctgagtgt 338
Query: 361 tcttaatgagtctgtgtgcagaagtgaaggaaacactctgaaagcagggtctgaggactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcttaatgagtctgtgtgcagaagtgaaggaaacactctgaaagcagggtctgaggactg 278
Query: 421 aatagaacctatgacttttgcaaccaagggtcaaatgtgttgcagtcaagagtctgatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatagaacctatgacttttgcaaccaagggtcaaatgtgttgcagtcaagagtctgatgc 218
Query: 481 taatggtcaaggtacag 497
|||||||||||||||||
Sbjct: 217 taatggtcaaggtacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
