BAC Information

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BAC

Clone NameMSMg01-411H23
Chromosome4 (Build37)
Map Location 87,079,960 - 87,080,380
singlet/doubletsinglet
Overlap genenone
Upstream gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411H23.T7 (MSMg01no411_h23.b1)MSMg01-411H23.TJ (MSMg01no411_h23.g1)
ACCAG508493AG508494
length809779
length of high quality
(start - end)		425 (46 - 470)422 (56 - 477)
definitionCHROMAT_FILE: MSMg01no411_h23.b1 PHD_FILE: MSMg01no411_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:34 2005CHROMAT_FILE: MSMg01no411_h23.g1 PHD_FILE: MSMg01no411_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCATCATCTGAACCTGGGTAGGAATTGCATGATATATAGATAG
CAACTCACAGTAACTAATGATTTATAATAAATGGTTCAGCAAAGAAAAGT
CTAGGTAAACTTCATATTTCACCCCTCTGGCAATGATCTACACAAGGTTT
GCATCTTAAATCAACTGGTGGTTGCACCCAGAAGGATGTGGTCTAAATAG
ATTTGTGTGATGGGGCAATTACTCATCACAGAAAGGATGCCTGCTGTCAT
CATGGCTTCTCACGAAGCAGCGAGTGCTTGAGCGGTTACAGAGTTACAGG
GCTGACCTCCTGTCTATTGCCCTCCACTTCCTGAGCTAGAGTCACAGAGC
CTGGTTATCAGGGAGATCTAGGAGACAAGTGAACACAGTCAGCACCCGTG
GCTGGAAGAACGCCTCCACAAAGGGCCCATTACCCATCTCTTTATTCTGG
CTATGAGTGGAAATTTTGTCAGGCGATTAGAGAGAAGATTTAAGGGTTCC
CAGAATAGGAAGATGATCAAAATGGCTAAAAAGTGAAGTGGGGGAAAAAA
AACCAAGGCGGGTTTAATTGGGCTCGTGGCTTCTCGGGGGGACTTGGCAC
AAAAAAATCAATTTCCCCTACACCCCTTCTCTGGCGTGAAAGGGGCCTTA
TTAAATATTTTTCTTTCCCACCTTCAAATCGACCTAATTGACATTTTTCT
CCCTTTCGCTTATGCATTGCGCCTATTCAAACCCCCTTCCCCATTACCCT
CTTCTTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGAGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGTA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATATCCAGAAGCTGGAAAGGACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAANATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGGAACAATTTCCCAAGA
AATCTCCCAGTAGGACTTCCCGATAAAGGGAATTATTCCCCAACCTAAGA
AACCCCAAAATTAAAAAAAATTTCCTCAACCCTGAAACCCCCAAAATGAA
AAATTACGTGGGGCATTTTGCCCCCCCTTAATAGGGAAAAAAACCCCCTT
TAGGGTGTAAGAAAAAAATTTTGGTCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_h23.b1 MSMg01no411_h23.b1 CHROMAT_FILE:
MSMg01no411_h23.b1 PHD_FILE: MSMg01no411_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:34 2005
         (425 letters)



>mm_chr4_87079756_87080580
          Length = 825

 Score =  775 bits (401), Expect = 0.0
 Identities = 416/421 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcatcatctgaacctgggtaggaattgcatgatatatagatagcaactcaca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatcacctgaacctgggtaggaattgcatgatatatagatagcaactcaca 264

                                                                       
Query: 65  gtaactaatgatttataataaatggttcagcaaagaaaagtctaggtaaacttcatattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaactaatgatttataataaatggttcagcaaagaaaagtctaggtaaacttcatattt 324

                                                                       
Query: 125 cacccctctggcaatgatctacacaaggtttgcatcttaaatcaactggtggttgcaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacccctctggcaatgatctacacaaggtttgcatcttaaatcaactggtggttgcaccc 384

                                                                       
Query: 185 agaaggatgtggtctaaatagatttgtgtgatggggcaattactcatcacagaaaggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaggatgtggtctaaatagatttgtgtgatggggcaattactcatcacagaaaggatg 444

                                                                       
Query: 245 cctgctgtcatcatggcttctcacgaagcagcgagtgcttgagcggttacagagttacag 304
           ||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 445 cctgctgtcatcggggcttctcacgaagcagcaagtgcttgagtggttacagagttacag 504

                                                                       
Query: 305 ggctgacctcctgtctattgccctccacttcctgagctagagtcacagagcctggttatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctgacctcctgtctattgccctccacttcctgagctagagtcacagagcctggttatc 564

                                                                       
Query: 365 agggagatctaggagacaagtgaacacagtcagcacccgtggctggaagaacgcctccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggagatctaggagacaagtgaacacagtcagcacccgtggctggaagaacgcctccac 624

            
Query: 425 a 425
           |
Sbjct: 625 a 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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