BAC Information

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BAC

Clone NameMSMg01-411N08
Chromosome4 (Build37)
Map Location 116,771,215 - 116,771,460
singlet/doubletsinglet
Overlap genePtch2
Upstream geneRad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3
Downstream gene9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411N08.T7 (MSMg01no411_n08.b1)MSMg01-411N08.TJ (MSMg01no411_n08.g1)
ACCAG508751AG508752
length770769
length of high quality
(start - end)
184 (328 - 511)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no411_n08.b1 PHD_FILE: MSMg01no411_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:01 2005CHROMAT_FILE: MSMg01no411_n08.g1 PHD_FILE: MSMg01no411_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATACAGTTCAATCCTTCTTAACAGNCTGCTTTACGGGAACCTT
TATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCCTGCG
CCGGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAG
ACGCGTTCTCACGCCCGGCCAGGAAAGATGCAACAGACCAGAATCTTCTG
CGTTTAAACTTTATTGCTTACATCTTTGGGAGCCAGGAGAGCAAGCGCCC
AGCGCCCAGCCCCAAATATGATAGTTTCTTCAATTATGAAACCGAAACCC
CTTCCCTCTTTAGGAGAGTTACCCTCCACTTAGGACGCATCACTCCCTGA
TTGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAAGCAGAGTACA
AGTAGTCGTAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTT
AGAACACAGGATGTCAACGCCATCTTGTGACGGTGAATGTGGGGGCGGCT
CCCAACAATACAGTCTACCTTTTCAAAAGGCTCTGCTTTTTTTTTTTCTC
TAAAACCCGTTTTCCCCTGTGTTGCGCTTGCCGGTGCTGGAACTCCACTC
CTGTTTATCTTTTTTTTTCTTCAACCTTAACATCTCCTCCTGCCTTGGTC
TCCTTATCGCTTGTCAATCCTTTGTCCTTGTCCCACCCCTCGCCCCTTCT
TCTCTTTCTTCTCTTTCTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACTGCGAAATTCCTATCTCAAAGAGACCAACTGCTACC
CTCTTATAATACATTTCTCATAACTGCAGGGACTAGCCAGGGGGGCCGGA
GAGGGATGAGCAAATGTAGACATCCAAGCAGTGTTTAATTGGGGAAGATC
CGGGGAATGCAGAGAGAGGAAAGGCAGGGCCTGGGAGGGAGACTCACTCT
ATTGTGGCAGGATATTCAGAAGTCATTTGGGACCACCCAAGCAGCAGTGG
TTTGTGTGGGGGCATGATTTATGCGTGTGCGCACATGTGTGTCCTGATGC
TGGGGGCAGACTGGCAGGCAGGGAGAAACATCTGCTCTGGACCCTAGGGC
TGTCTTAAGAGTGTGAACGCTAAGAGTCTGCAGAGGGCTGGGGGTAGGGT
GGAGATGGGGTGTGTCCTTTCTCCTTCCTCTTTTCTCCCCCCTCCTCCTC
TCTTTTTTCTCTCCCCTCCCCTCCCTTTTTTCCCCTTTTTTCCTCTCGCC
CTTCCTCCCCCCCCCTTTTCTTTCCCCTTTCCTTTCTCCCACTTTTTCTC
TCCTCCCCCCTTTCCTTCTCCTCCCCTTCCCTTCCCCCTCTTTCCCCCTC
CCCTTTCCCTTTTTTTTTTTTTTTCCCCCTCCCCCTTTCTCCCCTTTCCC
ACCCCCTCTTCCCCCTTCTACCCCTCCCCCTCTTTTTTTCTCTCTTTCCC
ACTTCTTTCCCCTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_n08.g1 MSMg01no411_n08.g1 CHROMAT_FILE:
MSMg01no411_n08.g1 PHD_FILE: MSMg01no411_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:01 2005
         (247 letters)



>mm_chr4_116771015_116771661
          Length = 647

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctatctcaaagagaccaactgctaccctcttataatacatttctcataactgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attcctatctcaaagagaccaactgctaccctcttataatacatttctcataactgcagg 387

                                                                       
Query: 61  gactagccaggggggccggagagggatgagcaaatgtagacatccaagcagtgtttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gactagccaggggggccggagagggatgagcaaatgtagacatccaagcagtgtttaatt 327

                                                                       
Query: 121 ggggaagatccggggaatgcagagagaggaaaggcagggcctgggagggagactcactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggggaagatccggggaatgcagagagaggaaaggcagggcctgggagggagactcactct 267

                                                                       
Query: 181 attgtggcaggatattcagaagtcatttgggaccacccaagcagcagtggtttgtgtggg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 attgtggcaggatattcagaagttatttgggaccacccaagcagcagtggtttgtgtggg 207

                 
Query: 241 ggcatg 246
           ||||||
Sbjct: 206 ggcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)