Query= MSMg01no411_p02.b1 MSMg01no411_p02.b1 CHROMAT_FILE:
MSMg01no411_p02.b1 PHD_FILE: MSMg01no411_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:09 2005
(590 letters)
>mm_chr4_65847933_65848922
Length = 990
Score = 1087 bits (562), Expect = 0.0
Identities = 583/590 (98%)
Strand = Plus / Plus
Query: 1 gggccgtgtctaagcatgaggcccttgagagaaccactggactacctctgtttcatttgg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggccgtgtataagcatgaggcccttgagagaaccactggactacctctgtttcatttgg 260
Query: 61 acattcaactcaggaaagaaaaacacatgactcagcagggaaaaatagcacactgagtca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattcaactcgggaaagaaaaacacatgactcagcagggaaaaatagcacactgagtca 320
Query: 121 ccagaagtggctaaggttgctagaactgacccatgctaatggcgccacattccgactcca 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ccagaagtggctaaggttgctagaactgacccatgctaatggcgacacattccgactcca 380
Query: 181 ggttctttcaccagagacaagtgaagaaagagaagaagcaattgatgtgtcatcgagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttctttcaccagagacaagtgaagaaagagaagaagcaattgatgtgtcatcgagagc 440
Query: 241 tggggcatccagcctctgagcacacaggaggagcaaatccagtcactggtggccaaaata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tggggcatccagcctctgagcacacaggaggagcaaatccagtcactggtggccaaaaaa 500
Query: 301 tatatatcttgcaggacaaaacaagtatcacagaaggagagaggaatgttgggtggacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatatcttgcaggacaaaacaagtatcacagaaggagagaggaatgttgggtggacaa 560
Query: 361 ttgtggattttcataaagcaagttaagaagaagacaaagttcaaaggctggtactgaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtggattttcataaagcaagttaagaagaagacaaagttcaaaggctggtactgaagc 620
Query: 421 cctttggtctcagagtcaacctgatgccacatccaatatgagggaaaacatttttggttt 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 cctttggtctcagagtcaacctgatgccacatccaatatgagggaaaatatttttggttt 680
Query: 481 gtttgtttgtgtgtttgttttttaagataaataaaaatggtgaaagactgaaaatcttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttgtttgtgtgtttgttttttaagataaataaaaatggtgaaagactgaaaatcttcc 740
Query: 541 ctctgccccaaatagcagtttattggtaatcagttttgcattagtgttta 590
|||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 741 ctctgccccaaataacagtttattggttatcagttttgcattagtgttta 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_p02.g1 MSMg01no411_p02.g1 CHROMAT_FILE:
MSMg01no411_p02.g1 PHD_FILE: MSMg01no411_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:09 2005
(597 letters)
>mm_chr4_66000489_66001484
Length = 996
Score = 1131 bits (585), Expect = 0.0
Identities = 594/597 (99%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 1 tcagggcagagagggaaaggtgaccctggttacaaagaatgacaccaatgcaagcaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 796 tcagggcagagagggaaaggtgaccctggttacaaagaatgacaccaatgc-agtaagcc 738
Query: 61 ttgaaaacatactggctgcattctccagagccttggaccacactgcacattgtggattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttgaaaacatactggctgcattctccagagccttggaccacactgcacattgtggattca 678
Query: 121 gagaaagtggattcagtggtgatttatatagctcataaacactgtattggaactcttgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagaaagtggattcagtggtgatttatatagctcataaacactgtattggaactcttgtc 618
Query: 181 tgctcatcagtctctccactaaactgaagtcatttgctcttctccttccctgtactctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgctcatcagtctctccactaaactgaagtcatttgctcttctccttccctgtactctgc 558
Query: 241 ctgaccatcttccatcgacctttacattcccacatcccatatgaatgaaatagagaactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgaccatcttccatcgacctttacattcccacatcccatatgaatgaaatagagaactc 498
Query: 301 tgcaacatctgactacgttagactaccaaatctctttatgtgtatattccttgaactatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcaacatctgactacgttagactaccaaatctctttatgtgtatattccttgaactatt 438
Query: 361 tcttgacttctgtatgatatacttaatgcttaatttcaatgaatttgctgtcctaccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcttgacttctgtatgatatacttaatgcttaatttcaatgaatttgctgtcctaccaat 378
Query: 421 tgagtcaactacgaactctgtgagagtagggttagagctacatttttctactcttatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 377 tgagtcaactacgaactctgtgagagtagggttagagctacatttttctactcttgtttt 318
Query: 481 tcttgaaagtctcctctgacccagagccaatatctggcagatagaagaaggagagaagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttgaaagtctcctctgacccagagccaatatctggcagatagaagaaggagagaagtc 258
Query: 541 accatgatcttaggctgagaacatagtatcatccactggtctctatgtactacagtt 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 accatgatcttaggctgagaacatagtatcatccactggtctctatgtactacagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
