Query= MSMg01no412_c07.b1 MSMg01no412_c07.b1 CHROMAT_FILE:
MSMg01no412_c07.b1 PHD_FILE: MSMg01no412_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:25 2005
(570 letters)
>mm_chr4_135139925_135140893
Length = 969
Score = 955 bits (494), Expect = 0.0
Identities = 515/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Minus
Query: 5 gaattccagatgttacggtgtccacacggagaacaggtaaactgaggcacaggccttccc 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattccagatgtgatggtgtccacacggagaacaggtaaactgaggcacaggccttccc 464
Query: 65 actgtccagtggggaaaccgtaggttacaaatgctggccagagcacagaagcacctgggc 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 actgcccagtggggaaaccgtaggttacaaatgctggccagagcacagaagcacctgggc 404
Query: 125 gaccaacaaaaataccacagtaatagcagacccctgctgggtcacttcatccattatttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaccaacaaaaataccacagtaatagcagacccctgctgggtcacttcatccattatttc 344
Query: 185 aagccctgtaactgggtgatagtctctctgccctccccttcagggaaacctctgtgtgga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagccctgtaactgggtgatagtctctctgccctccccttcagggaaacctctgtgtgga 284
Query: 245 cagaatactttgacagaatcaagagacacactattgtaattcttgctagggaagtctggg 304
||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct: 283 cagaatactttgacagaatcaagagacacacga-ggtaattcttgccagggaagtctggg 225
Query: 305 tagtaaggtttttatttttaaattcacaccaggagaaatgaccagatctttgaagtacag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tagtaaggtttttatttttaaattcacaccaggagaaatgaccagatctttgaagtacag 165
Query: 365 atcaacacattttggcagatgaatcttcccacgcagttacctccagaacccagatctaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 atcaacacattttggcagatgaatcttcccacgcagttacctccagaacccagatctaaa 105
Query: 425 ctctacccacactgtcccacaaccctttttgtcccctttgagttaactgctacaccccta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctctacccacactgtcccacaaccctttttgtcccctttgagttaactgctacaccccta 45
Query: 485 aaataaccacagttctgatctttatctaatggattggttttg 526
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aaataaccacagttctgatctttatctaatggattggttttg 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_c07.g1 MSMg01no412_c07.g1 CHROMAT_FILE:
MSMg01no412_c07.g1 PHD_FILE: MSMg01no412_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:25 2005
(244 letters)
>mm_chr4_134986420_134987064
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 241/245 (98%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 tttctcctctagaatttgtaaacaaactattatgtttcctaactccgggaacattctaat 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tttctcctctagaatttgtcaacaaaatattatgtttcctaactccgggaacattctaat 260
Query: 61 ctcttagccagatttgcttcaaatggaactcctgccaaccctggggctctggtttaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctcttagccagatttgcttcaaatggaactcctgccaaccctggggctctggtctaccat 320
Query: 121 ggttcccctctcatctctcatccagcattctcaggtagaactctactacctttttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttcccctctcatctctcatccagcattctcaggtagaactctactacctttttttttt 380
Query: 181 tttt-cttgatttggttttttgagacagggtttctctgtatagccctggctgtcctggaa 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcttgatttggttttttgagacagggtttctctgtatagccctggctgtcctggaa 440
Query: 240 ctcta 244
|||||
Sbjct: 441 ctcta 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
