NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTATCCTTGTACCCCATTTTTAATGGGATTATTTGAAT
TTCTGGAGTTCAGCTTCTTGGGCTCTTTGTATATATTGGATATTAGTCCC
CTATCAGATTTAGGATCGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACAGTGTCTTTTGCCCTACAGAAGTTTTGCACTTTTA
TGAAGTTCCATATGTCAATTCTTGATCTTATAGCACAAGCCATTGCTGTT
CTGTTTAGGAATTTTTCCCCTGTGTTTATATTTTCTAGGCTTTTCCCTAT
TTTCTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCTTTGA
TCCACTAAGACTTGAGCTTTGTAAAAGGAGATAAGAATGGATCAATTCAC
ATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGCTCCTCAATTCTATTCCACTGG
TCTACTTGTCTGTCATTTTACCAGTACCATGCAGTTTTTATCACAACTGC
TCTGTATTGCATCTTAATGTTCCGCATGGTGATTCCACCCCAGGTTCTTT
TATTGTCGATAATATTTTTTGCTCCCCACGTTTTTGTATATTTCCCATTG
ACTT

NCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTGTCAATGAGGGCAAAAG
AGAAAGTGGTTTTACTGTGGTAGACAGGGGTGTCAGGAAGCAGGAAAAGC
TGAAAATTCTCATGTAGAACTGATGTATAGAATTGCTGCCACTAGGAACT
GAAATGTAATTATTATTTACTATTTTCAATATTCTGTCATTAATATGTAT
GTATGTATGCATGTATGTATTTGATTCTGAGAAAAACTCCGAGAAGAAGT
GAAATTCCGTTTGGGGGTTGTGTGTTTTTTAGTGAGCACTTTGACCACTA
AGCTGTAAATACTATGCTTTTTTGAACCAGTTATGTATTGGCTACTGAGT
AGTAGTTTTCCTAAGTCCCATGTTGACTTGAGAGTGCAGCTTGATGGTCA
TGAGAGGATACAGGTTAACTTGGGAAACATCTTGTAGGGAAAGTAAGACA
GAGTGAATTCTGTGTTTAAACTTGGATTCCTTCCTTAAGAAAACCCCTTA
TCTGTGAGAACGTCTGTAATCCTGACCCCTTCTTGGTTCCAGTTATTTGA
TTACGACAATCCTTATTGTGTTTTCCTCACTAACCTTCCCCACTTGCCCC
TTAATATGCCTCCTTTTTTTTTTATTTAACTGTCCCTTCTCCCTAGTACT
TCTTTTTTTTACCCCCCTCCTCCTTTGCCTCTATATACATCTTATCACCA
CGTTTTAATTTCCTCCCCTCCCCCCCCTTTTTACTTTTTN

Query= MSMg01no412_h15.g1 MSMg01no412_h15.g1 CHROMAT_FILE:
MSMg01no412_h15.g1 PHD_FILE: MSMg01no412_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:51 2005
         (407 letters)



>mm_chr4_5595193_5596000
          Length = 808

 Score =  692 bits (358), Expect = 0.0
 Identities = 395/414 (95%), Gaps = 13/414 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagtgtcaatgagggcaaaagagaaagtggttttactgtggtagacaggggtgtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagtgtcaatgagggcaaaagagaaagtggttttactgtggtagacaggggtgtcagg 260

                                                                       
Query: 61  aagcaggaaaagctgaaaattctcatgtagaactgatgtatagaattgctgccactagga 120
           ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aagcatgaaaagctgaaaatcctcatgtagaactgatgtatagtattgctgccactagga 320

                                                                       
Query: 121 actgaaatgtaattattatttactattttcaatattctgtcattaatatgtatgtatgta 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaaatgtgattattatttactattttcaatattctgtcattaatatgtatgtatgta 380

                                                                       
Query: 181 tgcatgtatgtatttgattctgagaaaaactccgagaagaagtgaaattccgtttggggg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatgtatgtatttgattccgagaaaaactccgagaagaagtgaaattccgtttggggg 440

                                                                       
Query: 241 ttgtgtgtttttta------gtgagcactttgaccactaagctgtaaatactatgctttt 294
           |||||||      |      ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgtg------acggcaagtgagcactttgaccactaagctgtaaatactatgctttt 494

                                                                       
Query: 295 tt-gaaccagttatgtattggctactgagtagtagttttcctaagtcccatgttgacttg 353
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttgaaccagttatgtattggctactgagtagtagttttcctaagtcccatgttgacttg 554

                                                                 
Query: 354 agagtgcagcttgatggtcatgagaggatacaggttaacttgggaaacatcttg 407
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 agagtgcagcttgatggacatgagaggatacaggttaacttgggaaacatcttg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space:   318002
Effective search space used:   318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)