GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGGCCCTCTTATTGTCAAACAACACATTCAAGAATCATGGTCT
TTTCCACCTTATTTCTGAGCCCAGGGTTCACTCTAATTTTTTAAACTGTG
ATCTGAAACTTATTAATTTTTCATTGGGTCTCTTTTATCAACTAGTTTGT
TTGAACTGAATGTATCAAATTGTAAGAACTCTCTTTAATCCTTCATCTAG
ATCATAATTCTGAAGAACATCACCCTGGCCCACTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAC
ACACACACACACACACACACACACACACACCCTTTACTCTGGTTTCCCAG
TACACTTAAATTTCTTGGAAGCTAGTAGGGAAAAAAAAACAGAAAACTGA
ACTAAAGGATGGGAAATATGGATTTCTGAACATCAGAAATTAACAGCTCA
TTCCACCCCCGAGTATTGACATGTACTACCTTAATCTTGGAAAATACAGC
TTCACTCATGAAATGTATGCTAAAAATGATACATTTGTCCGCCATGAGGT
ACCTTGTACCAAGCCTTTTTTTTTTTTTTCTTTAAAAAAAGCCACATTTG
AAGAAAAAAATGGACTCTGTCTTTCAATATTAAACCTTAAAAACCATATT
GTCTTTCTCCGGGGTATGAGGAAGACATATGAATTACATTTTGCGGCTAT
GAGTGGCTCGCCTCCAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCTATTT
TTAATGGGGTTGTTTGATTTTCTGGTTATTTTTTTTTTATTATTCAATAA
AGTTTTATTTTCCCAAATGCACAGCTGATTGAACCTGTTCATGAATCCTC
ACCAGCAGCCGTAGCTTCTCCACCCTTTGTGTTTCTGGTGTAAATTATGT
GGGCTTGTGCTTTTAACCCAGCTTGATAAGTCCTTTACTAAGGAGCTCCT
GAAGGGCTGCCCTGGCCAAGGAATCTATGAATCTTCAGTCTCTCAGAGAC
CACGGCTGGAGTAATAAGCTTATAGTTCGGAACCTCCTTACAGAGCTTGT
CGTATGTTGCTTTGTCGAACAGGACAAGATTGTTCAGCTTGTCCCGAACT
TTGCCTTTGGATCACTTCTTCTTCTTGGCCTTGCCACCAGATTTATTTAC
TGGGTCTTTATCCTTTTTGGCCAACTTTCCAGCATCTTTCTTCTTGTCAT
CTTTGGGTGGCATGGCGAAGCTCAGAGAGTCATGTGGACCACAGCAGTCT
CGCTAATATGGAATCTACCTTTCTTGAAATCTTTATATATATTTGAAATT
AGTCCCCCATCTGATTTATTATAAGTAAAGAATCTTTTCCCCCCTGTTGG
GGGCCTTTTTGTATAATTTAACTGTCTTTTCCTCCAAACACTTTCAATTC
CTTTCGTTCCC

Query= MSMg01no412_k19.b1 MSMg01no412_k19.b1 CHROMAT_FILE:
MSMg01no412_k19.b1 PHD_FILE: MSMg01no412_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:07 2005
         (499 letters)



>mm_chr4_90517755_90518656
          Length = 902

 Score =  905 bits (468), Expect = 0.0
 Identities = 494/514 (96%), Gaps = 19/514 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggccctcttattgtcaaacaacacattcaagaatcatggtcttttccacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gaattctctggccctcttattgtcaaacaacacattcaagaatcatggtcttttccacct 248

                                                                       
Query: 65  tatttctgagcccagggttcactctaattttttaaactgtgatctgaaacttattaattt 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 249 tatttctgagcccagggttcactctaattttttaaactgtgatctgtaacttattaattt 308

                                                                       
Query: 125 ttcattgggtctcttttatcaactagtttgtttgaactgaatgtatcaaattgtaagaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttcattgggtctcttttatcaactagtttgtttgaactgaatgtatcaaattgtaagaac 368

                                                                       
Query: 185 tctctttaatccttcatctagatcataattctgaagaacatcaccctggcccacttctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctctttaatccttcatctagatcataattctgaagaacatcaccctggcccacttctct 428

                                                                       
Query: 245 ctctctctctctctctctctctctctctctct----------------ctctctctctct 288
           ||||||||||||||||||||||||||||||||                ||||||||||||
Sbjct: 429 ctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctct 488

                                                                       
Query: 289 ctctcacacacacacacacacacacacacacacacacacacacacaccctttactctggt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctctcacacacacacacacacacacacacacacacacacacacacaccctttactctggt 548

                                                                       
Query: 349 ttcccagtacacttaaatttcttggaagctagtagggaaaaaaaaa---cagaaaactga 405
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 549 ttcccagtacacttaaatttcttggaagctagtagggaaaaaaaaaaaacagaaaactga 608

                                                                       
Query: 406 actaaaggatgggaaatatggatttctgaacatcagaaattaacagctcattccaccccc 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 actaaaggatgggaaatatggatttctgaacatcagaaattaacagctcattccaccccc 668

                                             
Query: 466 gagtattgacatgtactaccttaatcttggaaaa 499
           ||||||||||||||||||||||||||||||||||
Sbjct: 669 gagtattgacatgtactaccttaatcttggaaaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 132
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 902
Length adjustment: 10
Effective length of query: 489
Effective length of database: 892
Effective search space:   436188
Effective search space used:   436188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)