TGGTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAC
AGGATCCGCGGAATTCTGTAGTTTCCGCATTTGAGCTATTGGCAAGATAA
GCTCAGAGACACACACAGCAAGACTTACAAGATTACTGGAAAACCATGTG
TATATTAGAAAAATGTCAGAGGCAGCCAGCAAAAAACAACAACAAAAAAA
AAAACAAACAATAAAACCAGCAGAGGTAAGAATGACTTGAGACTTTAGAC
TTCTTATCCCAAACTGCCAGTTGGAAGTTTCAGAACATTTAGAATGTGCT
GAATGACTCAACCTAGAGNTCTGTGTCTTTTTTTATACATTCATATTGAA
GCCAATAGACTTTTCTGAACAGAAGCCCAAGAAACCTTTCCTAAACTCCA
AAAAATTATTAAAAAAAATTTTGGCACCCCGGGGGGTTTTTTTTTAAAAA
AAGGTGTTTGGGCCCCCCCTTTTGTAACCAAAAAAAATTTTTCATAATCT
TTTACCCCCATATAAAACCCCGGCGGTATACCACCCCCCTTCGTTCAATC
TGGTGTGTTCAACAAAAAATAATATCCTTGCTTCGCCCCCCAATTTTTCT
TATACAAATAATATCCTCTTTTTCCAATAGCGCGCGCGCCAACCCACCAT
TCCCCTTTTTCTCTCGCCTCCCCCCTTTCTCCCCCTTCTACTCCTTCCTC
TTCCTCCCATTATTCTCCCTCCCCACCCTCCCCTCCCN

NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAACTTTATGTCTCAAG
CATCTATCATTGTTGGCCACCTGACCCCTATAGAGACAGCAGAGTAACAG
AGCATGTAGTGTTTTAGATGTGCAACTATTCTTAGTCAGTTCTGTGTTTT
ATGGTTTATGATTTTTGAATTTCATATATGTTTGTGTATATTGTTATCTT
TATTTTACCTGTAAATGTTATTTTAGTAATTGATGGTAAAAGTATGGCAC
AGAAAAAAATTATGGAAAATGATTCTTCTGAGAAACTGCCCTTATTTCCA
GAATTTGTGAGAAGACATATTTTCTGCTTTTGACTTTTTTTTTTTTCTTT
ATAAGTCAGGGTCTCATGCATCCCAATGAGGTCTACAGCCACTACACTCC
ATTTAGGCACGCTTCACGTGTGCTAGGTAAGCATTCTACCAACTGAATTA
CATCTCTGGCCAGACACGACACTTAATAACTCTTGGGTATTACTTATTTT
TAACAAATATAACAGAGAAATGTGTGGCCTTCTTGGCTTACTTTTAATCC
TTTTTCTTCTTTTCCATGTTAAGTTTATTTCCCTCTGAGATCTTCACTGG
CCCCTGGTTTCTCCACAACACCCTTTATAAACACCCTCACTGCTTACCAC
CTTTGAATAGCCAATTGGGCCAGGCACTCCCCACTTTAATGCGGGTTTCN

Query= MSMg01no412_m12.g1 MSMg01no412_m12.g1 CHROMAT_FILE:
MSMg01no412_m12.g1 PHD_FILE: MSMg01no412_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:16 2005
         (472 letters)



>mm_chr4_52563402_52564276
          Length = 875

 Score =  791 bits (409), Expect = 0.0
 Identities = 458/477 (96%), Gaps = 7/477 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataactttatgtctcaagcatctatcat----tgttggccacctgacccctatagagac 56
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 581 cataactttatgtctcaagcatctatcattggctgttggccacctgacccctatagagac 522

                                                                       
Query: 57  agcagagtaacagagcatgtagtgttttagatgtgcaactattcttagtcagttctgtgt 116
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agcagagtaaccgagcatgtagtgttttagatgtgcaactattcttagtcagttctgtgt 462

                                                                       
Query: 117 tttatggtttatgatttttgaatttcatatatgtttgtgtatattgttatctttatttta 176
           ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 461 tttatggtttatggtttttgaatttcatatatgtttatgtatattgttatctttatttca 402

                                                                       
Query: 177 cctgtaaatgttattttagtaattgatggtaaaagtatggcacagaaaaaaattatggaa 236
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cctgtaaatgtcattttagtaattgatggtaaaagtatggcacagaaaaaaattatggaa 342

                                                                       
Query: 237 aatgattcttctgagaaactgcccttatttccagaatttgtgagaagacatattttctgc 296
           |||||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 341 aatgaaccttcagagaaactgcccttatttccagaacttgtgagaagacatattttctgc 282

                                                                       
Query: 297 tttt-gacttttttttttttctttataagtcagggtctcatgcatcccaatgaggtctac 355
           |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 281 tttttgactttttttttt--ctttataagtcagggtctcatgcatcccaatgaggtctat 224

                                                                       
Query: 356 agccactacactccatttaggcacgcttcacgtgtgctaggtaagcattctaccaactga 415
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 223 agccactacactccatttaggcatgctttacgtgtgctaggtaagcattctaccaactga 164

                                                                    
Query: 416 attacatctctggccagacacgacacttaataactcttgggtattacttatttttaa 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 attacatctctggccagacacgacacttaataactcttgggtattacttatttttaa 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 875
Length adjustment: 10
Effective length of query: 462
Effective length of database: 865
Effective search space:   399630
Effective search space used:   399630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)