Query= MSMg01no413_e13.b1 MSMg01no413_e13.b1 CHROMAT_FILE:
MSMg01no413_e13.b1 PHD_FILE: MSMg01no413_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:55 2005
(657 letters)
>mm_chr4_17888534_17889590
Length = 1057
Score = 1224 bits (633), Expect = 0.0
Identities = 648/653 (99%)
Strand = Plus / Minus
Query: 5 gaattcacaatagatgactcttggaataaaattacagcttttaatcaaaattgaaacacc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaattcacaatagaagaatcttggaataaaattacagcttttaatcaaaattgaaacacc 648
Query: 65 caaatttcaagtttagaaaaattacaaaggtagtcttacaaagtattataaattagtctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caaatttcaagtttagaaaaattacaaaggtagtcttacaaagtattataaattagtctt 588
Query: 125 gttatgaacaggagaaaaagaaccacctgtttttattagatctgtgccagattccctcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gttatgaacaggagaaaaagaaccacctgtttttattagatctgtgccagattccctcct 528
Query: 185 ctgtttggtaagatcaggataaaatcccatggaatgaatcacccaaacagcttcccagga 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ccgtttggtaagatcaggataaaatcccatggaatgaatcacccaaacagcttcccagga 468
Query: 245 catccttatgccagcaccactctactacactttaactgctctctctaccttctgttataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catccttatgccagcaccactctactacactttaactgctctctctaccttctgttataa 408
Query: 305 cacatcaccttagagtatattctactctttctcaaagaaatctaaggtcttcaatctaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cacatcaccttagagtatattctactctttctcaaagaaatctaaggtcttcaatctaaa 348
Query: 365 gtaaaacttatttttgctccatggtctatactctgcctcatcaacagcagccactttaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtaaaacttatttttgctccatggtctatactctgcctcatcaacagcagccactttaaa 288
Query: 425 gctgaaatacagcaagcatttataacttcaaaggaaattacctaaactagccagaagaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gctgaaatacagcaagcatttataacttcaaaggaaattacctaaactagccagaagaat 228
Query: 485 aaaatgcaattgtcacattattgttaaaatattatacttataatattttatttgtcattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaaatgcaattgtcacattattgttaaaatattatacttataatattttatttgtcattt 168
Query: 545 agaatatattaaacaatttatagaaagaagagaatggtatattcacaaactcagaattac 604
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 agaatatattaaacaattaatagaaagaagagaatggtatattcacaaactcagaattac 108
Query: 605 aaatgatgcataaaatatcccagaagttaaaatgactaatgaacatgaaaata 657
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 107 aaatgatgcataaaatatcccagaagtaaaaatgactaatgaacatgaaaata 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_e13.g1 MSMg01no413_e13.g1 CHROMAT_FILE:
MSMg01no413_e13.g1 PHD_FILE: MSMg01no413_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:55 2005
(245 letters)
>mm_chr4_17751156_17751795
Length = 640
Score = 369 bits (191), Expect = e-107
Identities = 226/245 (92%), Gaps = 17/245 (6%)
Strand = Plus / Plus
Query: 1 ttgggtcttagctagctaggttttcaacaaaatgcctaggttagggagctttttggattt 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 213 ttgggtcttagctagccaggttttcaacaaaatgcctaggttagggagctttttgg-ttt 271
Query: 61 tttgttttgttttgttttttgttttttgtttttttttatccccatagttttccctctatt 120
||| |||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 272 ttt---ttgttttgtttt--gtttttt------ttttatccccatagttttccctctatt 320
Query: 121 ttgccctgactcctggaatacattaattacaaaaaaaaagagttttgtcttttccactac 180
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttgccctgactcctggagtacattaattacaaaaaaa--gagttttgtcttttccactac 378
Query: 181 agtaaaaaaatcataatttagtttgtaatgaaataattctcttgttctcctctatattga 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 agtaaaaaaatcataatttagtttgtaatgaaataattctcttgttctc---tatattga 435
Query: 241 ataga 245
|||||
Sbjct: 436 ataga 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 640
Length adjustment: 9
Effective length of query: 236
Effective length of database: 631
Effective search space: 148916
Effective search space used: 148916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
