Query= MSMg01no413_i12.b1 MSMg01no413_i12.b1 CHROMAT_FILE:
MSMg01no413_i12.b1 PHD_FILE: MSMg01no413_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:14 2005
(491 letters)
>mm_chr4_107323512_107324397
Length = 886
Score = 909 bits (470), Expect = 0.0
Identities = 483/490 (98%), Gaps = 5/490 (1%)
Strand = Plus / Minus
Query: 2 ttcccttggtcccgtattttttcctctctttgaaagtaaaagccttaggatcaaacacac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttcccttggtcccgtattttttcctctctttgaaagtaaaagccttaggatcaaacacac 627
Query: 62 gcaaatcgtggtcatctgtctctcctgcgctctgctaactccacagaagtgaacaggacc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcaaatcgtggtcatctgtctctcctgcgctctgctaactccacagaagtgaacaggacc 567
Query: 122 gaacggtttaaactctttccagcactggggggtggagccagctggctctgaagtctgagt 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 gaacggtttaaactctttccagcactggagggtggagccagctggctctgaagtctgagt 507
Query: 182 gtgcttacagcgcgtcctcacacggtcggttcctgagagcatccctgctgtcactgggcg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgcttacagcgcgtcctcacacggtcggttcctgagagcatccctgctgtcactgggcg 447
Query: 242 tcgctgatctgtttttgactcagttcctgtctggacttgtccaccgcaggacacttagct 301
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcgctgagc-----ttgactcagttcctgtctggacttgtccaccgcaggacacttagct 392
Query: 302 ttgctgagtcttattctatgcctttcttgctcagagtgattgattacatgcacgtaatat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttgctgagtcttattctatgcctttcttgctcagagtgattgattacatgcacgtaatat 332
Query: 362 ggatttccatttttctcaaggtaataaaaataaggctgtttcaaaaagtcgtacttctat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggatttccatttttctcaaggtaataaaaataaggctgtttcaaaaagtcgtacttctat 272
Query: 422 ggtaaccagcacccctcccccaaatgacctcatcaacccaaccttctttcctcttccagg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggtaaccagcacccctcccccaaatgacctcatcaacccaaccttctttcctcttccagg 212
Query: 482 gcagctgcat 491
||||||||||
Sbjct: 211 gcagctgcat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 886
Length adjustment: 10
Effective length of query: 481
Effective length of database: 876
Effective search space: 421356
Effective search space used: 421356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_i12.g1 MSMg01no413_i12.g1 CHROMAT_FILE:
MSMg01no413_i12.g1 PHD_FILE: MSMg01no413_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:15 2005
(165 letters)
>mm_chr4_107128518_107129082
Length = 565
Score = 304 bits (157), Expect = 2e-87
Identities = 163/165 (98%)
Strand = Plus / Plus
Query: 1 gccgtaggcagtgagctggggaggaaggaggagggaccttaattcctcctggtcgtgttc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gccgtaggcagtgagctggggaggagggaggagggaccttaattcctcctggtcgtgttc 260
Query: 61 tctaaggctcaggtggctcaggtggcaggcgtgtcatgcagaggctgcagggcttccaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tctaaggctcaggtggctcaggtggcaggcgtgtcatgcagaggcttcagggcttccaga 320
Query: 121 ccaggtatccttttgtgggaaaatcttctttcacgtgtccactga 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggtatccttttgtgggaaaatcttctttcacgtgtccactga 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space: 87449
Effective search space used: 87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
