BAC Information

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BAC

Clone NameMSMg01-413J15
Chromosome4 (Build37)
Map Location 47,699,100 - 47,699,608
singlet/doubletsinglet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413J15.T7 (MSMg01no413_j15.b1)MSMg01-413J15.TJ (MSMg01no413_j15.g1)
ACCAG510097AG510098
length712746
length of high quality
(start - end)
273 (34 - 306)547 (65 - 611)
definitionCHROMAT_FILE: MSMg01no413_j15.b1 PHD_FILE: MSMg01no413_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:20 2005CHROMAT_FILE: MSMg01no413_j15.g1 PHD_FILE: MSMg01no413_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTATACGACTCCTATTGCGAGAGATCCGCGGAATTCTGAAAC
TTTCCATCAATTTGTCTCTGTGTGATCCTTCCTTCTCTCTTGGATCTCAC
TCTGTCTTTCCTTCTGTGTATCTTTCTGTCTCTCTGTTTCTTTCTCTTTC
TGATCGACTTCCTCTCTCTTGGATCCCATTAGCAAGTTATCGGTGGTTAC
TGTCCCTGGTCCGTCACATCTTGTTATCCCAGTACTCCCCTTTAAGAAAG
TCCTGACAGCCTGACTTTGATTCTGGGGACCGACCTTGTGAAAGGAGAGG
ATTGACTGTCTCTGGCTACTTATCTTCTGGCTGCACACATATGCATGGTA
TGAGCCACTTTATACAAGATTTAAATTAATGAAAATTTAAATAAAAGGAA
AGTGCCTTCTATCTTATACTGCAGTGTTGGCTGCTTTTCTTCACACACTT
GTCTGCACTTCCTGCTATCTATCTCACTCTCTTGAAGAGCTTTAGGTAAA
ATTTTTCTTTTGCTGGTCTGAAACAATCTCTGGCCCTTCCCGAAGTGCCC
AGTGATTCAAAGCTATAGTCTCTCGGAGCGGAGGACGTCTGTTACCCAGT
GGCATCCGTTGTGAGAGCATCTTGTTCTTAACACTTTACATTTCAAAAGC
CTCCTTTGATTTTGTTCTCCTCACAGTAAAATTTTTTACTATGATGAGAA
TCCCACTTTAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCTTTTTAATAGGATGATTTTATTCCATGCTAGAT
TTTGAGAATTAGTGCTTGAAACTACAGCTCAGGAAGAAGAAATTAATAGT
TACTATTCATTTATTCATCCATTTTACAAGTATTTAGGGATGGCCTGCAG
AGGTTATGTTTTGCACCATGATAGAAGACAGACCAACAGAACTCTTGTTC
TATCACCGTGACAAGAAGCTTTTAGAATTTCTTTCCCATAGTCCTTCAGT
GCCTATAGGCAATGCTTTAAACATCTGTGTAGACTCTCAGGCCCAGACCT
TGAGCACTATGGTCTTTGTCTTTCATATACTCCCTTTGGAAGTCTTGTTG
ACTCTACCTTCAACATACAACAAGAATTTGATTTCTTCTTGCCACCATGG
TCCACATTTGGACACTGTCACATGCTGTTGTCATCCACAAACACCTCAGG
TCACATTCCTAGCTGTCATGGGATGCACACAGCCCACAAGTAATGAGCAG
ACATACCTGAATAATTCAGGTAATAGATGAGAGTCGTTTGAGAGAGAAGG
CTGGGTGACAGGTGACAGNTGTCTCCACACAGCCACTGCTGTAGTCACAG
AAGTCCTTCCGTGAACACTTGTCTTCACTCCTCACTCCGAGAAAAGCCCA
AGTTCCTTCAGGGGGATAGCAAGGGTGTCCAATGCTAAGCCCCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_j15.g1 MSMg01no413_j15.g1 CHROMAT_FILE:
MSMg01no413_j15.g1 PHD_FILE: MSMg01no413_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
         (547 letters)



>mm_chr4_47699100_47700046
          Length = 947

 Score =  961 bits (497), Expect = 0.0
 Identities = 506/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttttaataggatgattttattccatgctagattttgagaattagtgcttgaaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgctttttaataggatgattttattccatgctagattttgagaattagtgcttgaaacta 450

                                                                       
Query: 61  cagctcaggaagaagaaattaatagttactattcatttattcatccattttacaagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagctcaggaagaagaaattaatagttactattcatttattcatccattttacaagtatt 390

                                                                       
Query: 121 tagggatggcctgcagaggttatgttttgcaccatgatagaagacagaccaacagaactc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 tagggatggcctgcagaggttatgttttgtaccatgatagaagacagaccaacagaactc 330

                                                                       
Query: 181 ttgttctatcaccgtgacaagaagcttttagaatttctttcccatagtccttcagtgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgttctatcaccgtgacaagaagcttttagaatttctttcccatagtccttcagtgcct 270

                                                                       
Query: 241 ataggcaatgctttaaacatctgtgtagactctcaggcccagaccttgagcactatggtc 300
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 269 ataggcaatgcattaaacatctgtgtagcctctcaggcccagaccttgagcactatggtc 210

                                                                       
Query: 301 tttgtctttcatatactccctttggaagtcttgttgactctaccttcaacatacaacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttgtctttcatatactccctttggaagtcttgttgactctaccttcaacatacaacaag 150

                                                                       
Query: 361 aatttgatttcttcttgccaccatggtccacatttggacactgtcacatgctgttgtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aatttgatttcttcttgccaccatggtccacatttggacactgtcacatgctgttgtcat 90

                                                                       
Query: 421 ccacaaacacctcaggtcacattcctagctgtcatgggatgcacacagcccacaagtaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ccacaaacacctcaggtcacattcctagctgtcatgggatgcacacagcccacaagtaat 30

                                        
Query: 481 gagcagacatacctgaataattcaggtaa 509
           |||||||||||||||||||||||||||||
Sbjct: 29  gagcagacatacctgaataattcaggtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)