BAC Information

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BAC

Clone NameMSMg01-413L16
Chromosome4 (Build37)
Map Location 114,123,688 - 114,123,973
singlet/doubletsinglet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413L16.T7 (MSMg01no413_l16.b1)MSMg01-413L16.TJ (MSMg01no413_l16.g1)
ACCAG510194AG510195
length738751
length of high quality
(start - end)
289 (318 - 606)538 (64 - 601)
definitionCHROMAT_FILE: MSMg01no413_l16.b1 PHD_FILE: MSMg01no413_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:29 2005CHROMAT_FILE: MSMg01no413_l16.g1 PHD_FILE: MSMg01no413_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGTCC
TCTGACTCAATGAAGGGTTTGGGGATTCACACATCCACCATAACTTCCTT
TTTAAAAGAGGAAACAAGAAAAACCATCTCCTTACCCCAATCCCATAGCG
GTCTGCAACAATATTATCAGCTTCCAGTTCTGTTACCATTATATGTTTTG
CCAGCCGCAAATGGGACCTAAATTACATATTGTAGCCACCAAACCTTGGG
CATAGGTCCATAAAACAAGACTTGAGGGAAATTAGGTGAGGCTGAAGGGA
AGTCTGGCCTGTATTAAGAAGCTAGAAAAACAGCGCACACATGCTGTCTG
CAGGATCCTTCTCTTGTAGGGTGCTGGGTATGTAAGTAGGTTTAAAGATG
ACATTACGGAAAGGCCAGAGGGAGAAGTGAGGAGAGAGGCCAAGTAAGAC
AGAGCTTAGGACTAACGTGTCAGAACCTGCTTTTCTTTAAAAAAAAAAAA
AAGTTTTTTGATCCCAGCTCTGGAATATGGTTCTGTAAAACTATTTTCAC
CCATGTATAAAAAACACTGGTATCTTTTGTCTCAAACCCTGAGCTAAATG
TTAAGGTGGTGAAGGTTCACTGAGAGAAGCAAAAGGTGCATGCTCCACTT
GTTCTTGTCTTCATTTTGCAGCCACTGGGAACAAAGGGAAAGGCATTTTT
ATCTCCTGCCTCAAGAAATCGCCTGGATTCTATGTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAATGGGTTTAGAAAAATATCACATAAAGCTTGAAGGG
AAAGCTTCCTTCCCCTTATAGGAATAGGGGAGGAATTAGATAGAAGACTG
TGTTGGATAAATTTGGTCAGAATGCATTATATTCCTGTATGAAATTCTCA
AACAATAAAAAATGGGGAACACATTTGAATAGAAATTTTATGAAAAGTAT
GTATGCATAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATATA
CATATGCATGTTTGTCATTAGTGATTTTAAAAATATAATGGGAAAACATT
AAACATATACTAAAATGGCTATATCTAAAATATTAATTATTACCGAGAAT
GTGGAGGACTTGAATTCCTATACACTACTGAAGGGAACATGAAATAGTAC
AATCACTTCAAAGAACAGTTTGGTAACTAGTCCACTGAGGATATAAGAAT
GACTCTACAGTAGCTTCAGTATGAGAAGTCATACCANACTTCATTATGTA
ATAATTTTATTCCATATATAACACAAAGGACCAGCAATGAGTAAGCAGAT
AAATTGTTGTATAAATATATTGTAGAGCCCTATTGCAGACAAATTGTATT
TATAGTACAGCAGCAGCATGACTGAATCTCTGAATATTCCTACTGGATCA
AAGAAGCTAGACAAACATANTTTTGATAAGGGATGCCTAGGGATGAGATA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_l16.b1 MSMg01no413_l16.b1 CHROMAT_FILE:
MSMg01no413_l16.b1 PHD_FILE: MSMg01no413_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:29 2005
         (289 letters)



>mm_chr4_114123488_114124173
          Length = 686

 Score =  505 bits (261), Expect = e-147
 Identities = 281/291 (96%), Gaps = 7/291 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagctagaaaaacagcgcacacatgctgtctgcaggatccttctcttgtagggtgctgg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaagctagaaaaacagcacacacatgctgtctgcaggatccttctcttgtagggtgctgg 427

                                                                       
Query: 61  gtatgtaagtaggtttaaagatgacattacggaaaggccagagggagaagtgaggagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtatgtaagtaggtttaaagatgacattacggaaaggccagagggagaagtgaggagaga 367

                                                                       
Query: 121 ggccaagtaagacagagcttaggactaacgtgtcagaacctgcttttcttt--aaaaaaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 366 ggccaagtaagacagagcttaggactaacgtgtcagaacctgcttttctttttaaaaaaa 307

                                                                       
Query: 179 aaaaaaagttttttgatcccagctctggaatatggttctgtaaaactattttcacccatg 238
           ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aa-----gttttttgatcccagctctggaatatggttctgtaaaactattttcacccatg 252

                                                              
Query: 239 tataaaaaacactggtatcttttgtctcaaaccctgagctaaatgttaagg 289
           ||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 251 tataagaaacactggtatcttttgtctcaaaccctgagctaaacgttaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)