TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGGTGGCGCGGAA
TTCTATGTGGTTATCGGACATTGACATGCTAGAAGTCTCCCAAGGTGTCT
TGGTGAGATGATGTTATATTATGATAATCCTTCTGGAAAACCAAGGGGAT
TTTTCTAAGGGTCTGGGTAGAAGAGCATCCGTAGGAGGTGTGTTCAGAGC
TAACAACCAAAGATTGGGACGTACTACATTATTTTTGTCTTGTGGTCTAC
TAGATTTATTCCCACGAGGGCTGGGCCAGTTAATGCCTGGAGTACAGGCA
TGGATGGTACAAGTATTATTTCATTCTTTATCAGNGCAAGGCACAGTTGG
CATGACAGATTTCTATGGCCATCATCAGGGACCATTGTAACAATCTTCTA
ATATCAGGTACTGGCAGCACACACATTCAGCTAGTCAGGGAAGCTGGAGT
TTATGGAATTTATGGGGGACACTCATGGTCAGCTGACCAGCCACTGTACA
GACTTGATGTCTGAGAACAGAGTCTAGTTTGCCTACACATCTGTAGTTTG
TTACTTGTCTGACCACACTGTTCCTGCATGTTTTTCCCTTCTGGAGTTGT
GTGAGTTGAGTTTTCTGAGGAAGTTGTCTGTCTTGTTTTCCCTCTGCCCT
GTTGGAGGCTTTTTTTTTTTTTTTTTCGAATTTATAGAAAGTGTTAACGT
TTAATTGAGTTTATCCCTCTTCTAATTTTCCATATGCGAACCCACTGTTC
TGATATTACGCCTTCTTTATGTCCTCTN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTCGAACTCCAGAAAATATCTAAAGGTGCAACATC
TTAAAAACTCACGGGATGGTGAGGCCTATGCTGGACCTGCCTTAGCTGGC
TCAAGTCAACTTACGATGTGTTTTTGATTCCCTTTTGAAGTACTGGCCAT
GCATTGTGCTATGGAGGCAGTGAGGAATTTATTTGGTTGCAGGGTGTCAA
CACAGATCTGTTTAAGGAGTGGTCTATAAACACCTTTCTAAAGTCCAGCA
TATAAACACTGTCTGTGGAGCCCATTCGTGTTTTACAGAATTGGGATACG
GTTTGTGAACCGTGCCTCAACATTGAATGACAAGGAATGAATCGAACCTG
TTGTTATCGGTATGTACTTGCGGCACAGATCCCCTATATTCCTGTAGTGT
TCCACCCTGCTTATTCCCCTTAGTCTGCCATACTGTTCTTCCATTCTATA
CACGAGGATATCTTTTACCATCACATCTCCTGTTCACTATTATTTTCATC
TTGCTTCTTCTTGCCTCACCCTAACACTCTCTTCTATTGTCCTTTTTATC
GTATTTCTCTATCCCACTCCTCTTCTTCTCTCTTTTTTTTTTACTTTCCC
TTTTTTCCTTTTTTTCTTTCACCTCAACAACCGCCAACTATCCCCTTCTT
TCCTCTTACTCACCTTCTCCTCATTCCTTTCTCTCTCCTTATCTTACTTC
TTCTTCTTCTCTTTTTTCACTACTGTATTATATAAACTCATTATCTTATC
TATTATTCTATTTAATCCCT

Query= MSMg01no414_i09.b1 MSMg01no414_i09.b1 CHROMAT_FILE:
MSMg01no414_i09.b1 PHD_FILE: MSMg01no414_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:35 2005
         (176 letters)



>mm_chr4_104212831_104213406
          Length = 576

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctagaagtctcccaaggtgtcttggtgagatgatgttatattatgataatccttct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 376 catgctagaagtctcccaaggtgtcctggtgagatgatgttatattatgataatccttct 317

                                                                       
Query: 61  ggaaaaccaaggggatttttctaagggtctgggtagaagagcatccgtaggaggtgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaaaaccaaggggatttttctaagggtctgggtagaagagcatccgtaggaggtgtgtt 257

                                                                   
Query: 121 cagagctaacaaccaaagattgggacgtactacattatttttgtcttgtggtctac 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagagctaacaaccaaagattgggacgtactacattatttttgtcttgtggtctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no414_i09.g1 MSMg01no414_i09.g1 CHROMAT_FILE:
MSMg01no414_i09.g1 PHD_FILE: MSMg01no414_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:35 2005
         (249 letters)



>mm_chr4_104054137_104054785
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaatatctaaaggtgcaacatcttaaaaactcacgggatggtgaggcctatgctggac 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaatatctaaaggtgcaatatcttaaaaactcacgggatggtgaggcctatgctggac 260

                                                                       
Query: 61  ctgccttagctggctcaagtcaacttacgatgtgtttttgattcccttttgaagtactgg 120
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccttagctggctcaagtcagcttgcgatgtgtttttgattcccttttgaagtactgg 320

                                                                       
Query: 121 ccatgcattgtgctatggaggcagtgaggaatttatttggttgcagggtgtcaacacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgcattgtgctatggaggcagtgaggaatttatttggttgcagggtgtcaacacaga 380

                                                                       
Query: 181 tctgtttaaggagtggtctataaacacctttctaaagtccagcatataaacactgtctgt 240
           ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgggtaaggagtcgtctataaacacctttctaaagtccagcatataaacactgtctgt 440

                   
Query: 241 ggagccca 248
           ||||||||
Sbjct: 441 ggagccca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)