Query= MSMg01no414_n18.b1 MSMg01no414_n18.b1 CHROMAT_FILE:
MSMg01no414_n18.b1 PHD_FILE: MSMg01no414_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:03 2005
(498 letters)
>mm_chr4_128413821_128414718
Length = 898
Score = 926 bits (479), Expect = 0.0
Identities = 494/499 (98%), Gaps = 2/499 (0%)
Strand = Plus / Minus
Query: 1 tctaccaatgccctgggctgaaggctctgccagggggattcccacaggtctcagatgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tctaccaatgccctgggctgaaggctctgccagggggattcccacaggtctcagatgcct 639
Query: 61 tcctacagtgagcacctcaacagaatggtgggcactcctctagctccaggggctggaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcctacagtgagcacctcaacagaatggtgggcactcctctagctccaggggctggaggg 579
Query: 121 ggaaatggtaggccaagccgcaccgggaagaggcaggttggaactgctattaagttgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggaaatggtaggccaagccgcaccgggaagaggcaggttggaactgctattaagttgacc 519
Query: 181 acactggactactagtatgtgccagtcttagcatatgatcagcaactaggctgatctcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acactggactactagtatgtgccagtcttagcatatgatcagcaactaggctgatctcat 459
Query: 241 tcacaggctccagcatatacagctttcacaagaaacaaacaggaaagtcttctatgctac 300
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcacaggctccagcagaaacagctttcacaagaaacaaacaggaaagtcttctatgctac 399
Query: 301 tgttctgaacccattctctttgagactggtcacttctgctaacaaagacaggggctgtgt 360
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 398 tgttctgaacccattctc-ttgagactggtcacttctgctaacaaaaacaggggctgtgt 340
Query: 361 gacccagttacc-ccccccccccaggagactaacccaatgtccaatatacgatacatgct 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gacccagttacctccccccccccaggagactaacccaatgtccaatatacgatacatgct 280
Query: 420 caaggcctgttaaactgcaatgaattctaatataaaataataaatacgaataaagtcagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caaggcctgttaaactgcaatgaattctaatataaaataataaatacgaataaagtcagt 220
Query: 480 gctcatcgccataaagaat 498
|||||||||||||||||||
Sbjct: 219 gctcatcgccataaagaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_n18.g1 MSMg01no414_n18.g1 CHROMAT_FILE:
MSMg01no414_n18.g1 PHD_FILE: MSMg01no414_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:03 2005
(442 letters)
>mm_chr4_128241037_128241878
Length = 842
Score = 806 bits (417), Expect = 0.0
Identities = 435/441 (98%)
Strand = Plus / Plus
Query: 2 gtctcctattctcaggagaagacccaaagtcccattcaatggctatgctggccacgagaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtctcctattctcaggagaagacccaaagtcccattcaatggctatgctggccacgagaa 261
Query: 62 cacaaacgtgcgggccacatttgagaaccccatgtatgaccgcaacatccagcccacaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacaaacgtgcgggccacatttgagaaccccatgtatgaccgcaacatccagcccacaga 321
Query: 122 catcatgagcaacgaggcggagttcacagtcagcacggtgtgtactgcggtatagccccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catcatgagcaacgaggcggagttcacagtcagcacggtgtgtactgcggtatagccccc 381
Query: 182 aggcctggctgcagctgccaccgccaccgagtgccccgccgccagcagccggtgagattc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggcctggctgcagctgccaccgccaccgagtgccccgccgccagcagccggtgagattc 441
Query: 242 ttgttctggagagggtgggagacagactggctctgcaggggacacagtgacctgtgtaca 301
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 gggggctggagagggtgggagacagaccggctctgcaggggacacagtgacctgtgtaca 501
Query: 302 cattgctcctgcacacaggggcaccccaccaccacaggcatggagagctggccagtagca 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cactgctcctgcacacaggggcaccccaccaccacaggcatggagagctggccagtagca 561
Query: 362 ttaggaccctcactgcagatgagaaaactgaatttaagcacgtgaacattaacaaacttg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttaggaccctcactgcagatgagaaaactgaatttaagcacgtgaacattaacaaacttg 621
Query: 422 aacaaggccatgtatctaaga 442
|||||||||||||||||||||
Sbjct: 622 aacaaggccatgtatctaaga 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
