BAC Information

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BAC

Clone NameMSMg01-414O05
Chromosome4 (Build37)
Map Location 118,801,069 - 118,801,404
singlet/doubletsinglet
Overlap geneSlc2a1
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833
Downstream geneZfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O05.T7 (MSMg01no414_o05.b1)MSMg01-414O05.TJ (MSMg01no414_o05.g1)
ACCAG511077AG511078
length817782
length of high quality
(start - end)
336 (70 - 405)250 (75 - 324)
definitionCHROMAT_FILE: MSMg01no414_o05.b1 PHD_FILE: MSMg01no414_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005CHROMAT_FILE: MSMg01no414_o05.g1 PHD_FILE: MSMg01no414_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGATTCTCTGGGGCTGCTCTGTCTTCCCTGAGCCAGTGTGAGC
TAGGAGCCTCATGTGAATCTTACAGGAGTCTCTCAGAGCAGCAGGACTGG
AAAGCCAGGCTCAGACAGTATTCCTGATTCTGATAGGAAGCCCACTGCTC
AGCCTCTGCTGTCCCTGAGCGTGGTTGGGGCCGCTGTTACAGTATAGGAA
GCTGGCTGCCCGTGCTGCCCGGCAGAGGACTCGGCAATAGAGAGGAAGGA
GCGGGAGAGTGAGCTTTGGCTCACTGTTGACAACCCAGGCCAGCAGCTTC
CCTGCATGTGGGTGGGAGAGGTTGGGAGCACCTTATCACTCCGCTGCTTC
TGTGAGGAAAGTTAAAGACCTGATCTGGAGGATGAGATAGAGGCTCAGTG
CTCGTCCTTTAGTTCATGTTTGGTAGCTTCTCTTCAGTCTTATCTGACTT
ACTCTTGCTAGATCTCCTCCTTCGCAGCTTTGTCAAGTTTGCTCTCATAC
TCTGTTTTCCCATATAACTTTTTTATCAACTTGCGCTCGTCTTCATTCTT
TTCTACCCTATTTTCCGTTCATCTCGCAACTCATAGGCACTTTCACATCG
CCTGCATCTATTGCTGTGTCTTCTTTTCCAACCTTTTATTTGCTACTACC
GCGTCCACTTTTATTTTGATGATCTGCCCATTGTTTATTCAACTTATACT
AGAATTCGTCTGTTCTTGTCATCTACGATCTTGCAACGCTCAGTCCCCAT
TATTATTATTACTTCGN
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGGTCTTGGCTGACTGCAAATT
CAGAGATCAGCCTATCTCTGGCTCGTTCATTATTTTATTGCATACTTATT
GGGTGATTGGAACATTTGGAAGTCAGAGGACAACTTGCAGGAGTTATCCC
TGTGTGGGTTCCAGGAATCCAGTTCACATGGTCAGGCTTATCAAGAAAAC
AACTTCACTTGCTGAACCATCTTACTGGCCCCATCATTTTAAATAACATT
ATCAAGTCAGCAAATATGGATGAGATGTTTCTAGCCTTTAATCCCAGCAC
TTGAGAGAGATCTCTAGGTTTGACTTAGGTGTGCCTGGTCTGCATATTGA
GATTATCTGTTCAAACATACACAAGCAATAACTAGCTGTTTTAATTAGGT
TAAAAAAATTGCTATTCACATACTGAGTTTACTTAATATAAAAACCTAGT
AGGCTAGTGATTCTTGGGAGTGGGTGTTTGAGATGATGTTTTGCACATTC
CCTTGTTTTGTACTGTTCCTTCCCCTTCCTTCCTGTCCTTCTTTATCTTC
TTCTCTGTCTTCTTTCTTCCTTCCTTCTCTTTATTTTCTTCCTATTTTCA
TGTTACGTCGCTACTTCGCTTTTTATTTCCTAAAACCTCCTCACCCTCCT
TTTAAACCCTTCTGTATCTCTCTCCTATCTCTCTAATCACCTCTTGCCCA
CTTTCTCTTCTCCTCTCTATTTTTCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o05.b1 MSMg01no414_o05.b1 CHROMAT_FILE:
MSMg01no414_o05.b1 PHD_FILE: MSMg01no414_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:05 2005
         (336 letters)



>mm_chr4_118800869_118801604
          Length = 736

 Score =  559 bits (289), Expect = e-164
 Identities = 325/339 (95%), Gaps = 6/339 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgctctgtcttccctgagccagtgtgagctaggagcctcatgtgaatcttacag---g 57
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||   |
Sbjct: 201 gctgctctgtcttccctgagccagtgtgagcttggagcctcatgtgaaccttacagaagg 260

                                                                       
Query: 58  agtctctcagagcagcaggactggaaagccaggctcagacagtattcctgattctgatag 117
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctc--agagcagcaggactggaaagccaggctcagacagtattcctgattctgatag 318

                                                                       
Query: 118 gaagcccactgctcagcctctgctgtccctgagcgtggttggggccgctgttacagtata 177
           |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 319 gaagcccactgctcagcctctgctgtccctgagcctgggtgggaccgctgttacagtata 378

                                                                       
Query: 178 ggaagctggctgcccgtgctgcccggcagaggactcggcaatagagaggaaggagcggga 237
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 ggaagctgg-tgcccgtgctgcccggcagaggactcggcaacagagaggaaggagcggga 437

                                                                       
Query: 238 gagtgagctttggctcactgttgacaacccaggccagcagcttccctgcatgtgggtggg 297
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagtgagctttggctcactgctgacaacccaggccagcagcttccctgcatgtgggtggg 497

                                                  
Query: 298 agaggttgggagcaccttatcactccgctgcttctgtga 336
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 agaggttgggagcaccttatcacttcgctgcttctgtga 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)