BAC Information

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BAC

Clone NameMSMg01-415G12
Chromosome4 (Build37)
Map Location 86,627,875 - 86,628,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneSlc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415G12.T7 (MSMg01no415_g12.b1)MSMg01-415G12.TJ (MSMg01no415_g12.g1)
ACCAG511473AG511474
length770726
length of high quality
(start - end)
233 (69 - 301)224 (357 - 580)
definitionCHROMAT_FILE: MSMg01no415_g12.b1 PHD_FILE: MSMg01no415_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:47 2005CHROMAT_FILE: MSMg01no415_g12.g1 PHD_FILE: MSMg01no415_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTAAACGAATCACGATTCGATACGGATCCGNGGAATTCAC
TGATTTCACTGATGGGACAGGGACTTTAATAGAAAACCCAGCAATGCCAA
CAGGAACACGGTCAGTAGATGTCAAAACTAAGCTGACACTGATAAGTGTA
ATCCAGGTAAGGAGAAGGCACCATGGGCAATGAGAGGGATCTGGGCTTAG
AGTCAAGAGTGCAGCACCACCAGCTGTGGTTCCAGTAGACCCTTCCTGGC
AGTGTTTGGGATGCCAGGACCTTTATGTTAGGTCAGGAGGTTGAATCTCT
AGATGGTTAATGNATTTATGTGACTCAGTTATCTTACCTGTTCCAAGATG
TCATACCTGCTCATTGCTGTGCCTATTGTGTGACCTTTCTTATCCTGCCA
CTATGCTATAAAATTCGCGTAGTTGACCTTAGAATCCTTGTTCATAATCT
TCTTTCCTGCTTGTGCCTTATGATCTTCTTCTCTACTTACTGCTCCCCCC
TCACTCTTTATCTCCCTCCTTTCCCCATTTTTTTTTCCCCCCCCTTCTCC
CTTTCCCCCCTTTTTCATCCCCCCCCTCTCTTTTACTTTCCCCCCCCCCT
TTCTACCCCTAATTTTTTTATTTTCCCTCCTCCTCCTTTTCCCCCCCACT
CCTTCTTTTCTCTCTTTTCCCCCTTTACCATTCCCCCTTCCTTTTTCCTT
TTCTCTTTTCTTCTCTCCCCTTCATTTCTTTCCTTTTTATCCCTTTTACC
CCTATTTTCCTTCCTTACCC
AGTGGTAGGCCTGGNGGNCGCCTGTTTCTCAACATGAGGNGAACTATAGA
ATTTCAGCAAACATCTCTGCTTCTCTTCCTGTCTTCTGTCTTACCCTAAC
AAAGGGCTTTGCTCTCTATTTATTAAACAGCACAGAAAATATGGTATGGG
AAACACATAAGGGATTATTTACTACTTTTAAATACAGTATATTTTAATCA
TATTATTTCTCCTCCCAGACAATTCCCCTCCTACCCATGCATCTTCATGA
TCTATCTACCCACCCCCAAAACAACCAAAACCCACTACCAAACCAAAGAA
ATTATTAAATAAGTAAACAAATAAACATGAGATTCTCTTTTGTGTTATCT
AACTGACTATTCTTAAGAATAAATCAAATCTGCCTCTCACTGTGTGAATC
ACTCCATTGGAGAGAACTGGTATTTCCTCTCCAGAGGCTATTAATTTCAT
CTCAAATCTTCAACAGAGTTTTGCAAGAGAAGTACCTTTACTGGTCCCAA
CTGACCCAGCACTCCAAACTGCAAGCAGATACTATCACCCTGCGTACTTC
TTGCTTCTAACATTTATGGTGAATACTTGCCGTTTTAAGGTTGCCTCCCG
TTGGTTGGCTGTTTTTCCCACACGACNACAACTTTTTTTCTTACCCAGGC
ATACCGACGCTCATTATTAACGCCGGGCACTTACCTCTGGGTTATAACAC
GCTGGTTGTACGGCCAATTCTCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_g12.b1 MSMg01no415_g12.b1 CHROMAT_FILE:
MSMg01no415_g12.b1 PHD_FILE: MSMg01no415_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:47 2005
         (233 letters)



>mm_chr4_86627675_86628307
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggactttaatagaaaacccagcaatgccaacaggaacacggtcagtagatgtcaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggactttaatagaaaacccagcaatgccaacaggaacacggtcagtagatgtcaaaac 260

                                                                       
Query: 61  taagctgacactgataagtgtaatccaggtaaggagaaggcaccatgggcaatgagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagctgacactgataagtgtaatccaggtaaggagaaggcaccatgggcaatgagaggg 320

                                                                       
Query: 121 atctgggcttagagtcaagagtgcagcaccaccagctgtggttccagtagacccttcctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atctgggcttagagtcaagagtgcagcaccaccagctgtggttccagtagacccatcctg 380

                                                                
Query: 181 gcagtgtttgggatgccaggacctttatgttaggtcaggaggttgaatctcta 233
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gcagtgtttgggatgccaggacctttgtgttaggtcaggaggttgaatctcta 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)