Query= MSMg01no415_i05.b1 MSMg01no415_i05.b1 CHROMAT_FILE:
MSMg01no415_i05.b1 PHD_FILE: MSMg01no415_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:55 2005
(248 letters)
>mm_chr4_92727333_92727980
Length = 648
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Minus
Query: 1 cattaatagtagtttgatttagaaaggaacattaaacattttgcgagctccaagagactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cattaatagtagtttgatttagaaaggaacattaaacattttgcgagctccaagagactc 389
Query: 61 atctttaaatgtcttaaaatacttaaataccttaatatttacatttcatacatttaaata 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 atctttaaatgtcttaaaatacttaaataccttaatatttacatttaatacatttaaata 329
Query: 121 catttatcttaataactatattaaaaacactattttaaaaatggccaaaggtgttctacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catttatcttaataactatattaaaaacactattttaaaaatggccaaaggtgttctacc 269
Query: 181 aagaaacaacagacatagaaccgacattgtatcacccaacaaaatgaacttcaaaccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagaaacaacagacatagaaccgacattgtatcacccaacaaaatgaacttcaaaccaaa 209
Query: 241 gctagtct 248
||||||||
Sbjct: 208 gctagtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_i05.g1 MSMg01no415_i05.g1 CHROMAT_FILE:
MSMg01no415_i05.g1 PHD_FILE: MSMg01no415_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:55 2005
(566 letters)
>mm_chr4_92628108_92629073
Length = 966
Score = 1006 bits (520), Expect = 0.0
Identities = 550/566 (97%), Gaps = 10/566 (1%)
Strand = Plus / Plus
Query: 1 tggaattagtccctgaatgagtgccaagcatgttaaataagcttcacgttgggagcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaattagtccctgaatgagtgccaagcatgttaaataagcttcacgttgggagcatct 260
Query: 61 aagatggaatgatcatagcatcgttagatttaaaacactcatgaggccaagttctaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatggaatgatcatagcatcgttagatttaaaacactcatgaggccaagttctaaagg 320
Query: 121 aagcaacacaaattatcagccttctgaaagtgccaactgtgagcaaggacaaaatgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaacacaaattatcagccttctgaaagtgccaactgtgagcaaggacaaaatgattt 380
Query: 181 agataatgcttagcagggatatgaaatatgaaaactccaccaagacaaaacaaagaaaat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaatgcttagcagggatatgaaatatgaaaactccaccaagacaaaacaaagaaaat 440
Query: 241 atttctttcaactgacaaaaaagaagaaagactataggagatcctgttatctatattaaa 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcagtcaactgacaaaaaagaagaaagactataggagatcctgttatctatattaaa 500
Query: 301 tagaaccaaaaattagtaatgtgctcactaatatgtaaaacaaaacaaaacaaaacaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaccaaaaattagtaatgtgctcactaatatgtaaaacaaaacaaaacaaaa----- 555
Query: 361 caaaaaacactttcaggtaagattctgttatatgaagtaagactgattagttaatatcaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 -----aacactttcaggtaagattctgttatatgaagtaagactgattagttaatatcaa 610
Query: 421 gctaaaattcataacataaaatgtggctttaatttctccctcttacgtcttacacatgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gctaaaattcataacataaaatgtggctttaatttctccctcttacgtcttacacatgga 670
Query: 481 ctttagaacaatttgcttttgctggtaaagcataaactttatcagcctaagtgatagtcc 540
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 671 ctttagaacaatttgcttttgctggtaaagcataaacattatcagcctaaatgatagtcc 730
Query: 541 acaaggggtaagctacgaattagtgg 566
|||||| |||||||||||||||||||
Sbjct: 731 acaaggagtaagctacgaattagtgg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
