BAC Information

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BAC

Clone NameMSMg01-415J13
Chromosome4 (Build37)
Map Location 140,354,197 - 140,472,387
singlet/doubletdoublet
Overlap genePadi3, Padi1, Padi2
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4
Downstream geneSdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415J13.T7 (MSMg01no415_j13.b1)MSMg01-415J13.TJ (MSMg01no415_j13.g1)
ACCAG511618AG511619
length740751
length of high quality
(start - end)
451 (39 - 489)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no415_j13.b1 PHD_FILE: MSMg01no415_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:01 2005CHROMAT_FILE: MSMg01no415_j13.g1 PHD_FILE: MSMg01no415_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,471,940 - 140,472,387)(140,354,197 - 140,354,435)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GACTTCCGAAGGCCATGTCTTGGGACTCGTGCATGACTTCCTGCTGAAGG
AGAAATGGTTTGGGGATTGTGAGAACTCAGCAAGACTCAGGGTAGGGAGG
GCATTGGCTGCTCTGGCTGCTAGATATGGAAGTCTATGTAGGACAATTTA
TACCCTGACATTCTAACTCAACAGGGTGGCCGTCTGGAGACTTTTAGGAG
ATGGCGAAGGTTGCACGGGGCATCAGGGGCTCTAATCAACTATGAATGGT
GGCCTTTTATTATGTGAGAGAGAAAATAAAGGGGCACAGGTAGCAGGTGC
CAGGGCGACCAGGGGGTGGAGGTGCCAGGACTGGCAGTTTGGGTAAACCA
GGTTTGACGGTTCCTAAGAACCACCGTGGGTCTGGGGGCTCTGGAAGGAT
TCTTGTGGGATTTGAAATGACTGCAGTACAGGCCTGAGTATGTATCATGC
AAAGCTGCTGCTGCGCCCGCGGTCTGTCAATCTGAGGTCCCAGAGTCTCA
TATACCTTCGCCACTGTCCCAATTTTTAAGCTCTCTCTCCCTCTCTCCCT
CTCCTTCTACTCTTCACCCTCTTTTTACAACCTCGGCCATTTCCTTTCCC
CCCCCACACTCTCCTTTCTTCTAAACTTACCCCTTCCCCATTCTCTCATT
TTTTCCTTTTGAAGTCTACCCCCTCCTTTCCTTTACTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGATGCGAACAACAGAGGGGCGTGTATACA
GACATTGCCCTGCTTGTGTCTTCTTTGCAGCCCCTGTATCCTCATCCTGG
AGCAGAGGTGAAGCGCACCTGGGCATCTCACTGGGCAAGCCATGACCCTT
CCGGTCTCCAGAGGATGCTGTTCACTTTAGAAGCCAGCTTCTTTGAGCAT
CATGTAGGGACTCCCTCAATCGCAGTTAGAGATTTATTGGGAAGGGTCTG
AATTTGGTGTTTGTGTCAACAGACTCAATGTGCAATTTGGAGGGGGGGCA
CTCCTGATCTGTGAGCCTCCCCTCTAAACTGGGGTAACAACACTTGCCCC
CATGGATGATTAAAGAAAGATCTGGGGGGAGGGCCTTGCATATAATAGGT
ACTCAACCAATGCTGTCGGCTACTTCTCTCCAGTAGGACTATAACGCTGG
GCGATCTGCATGCAATGAGCACCACCTGCATACTCTACTGTGTTACAGTC
TCCTGCCCCTGACTCTTCCTCTGTACTACTCTCCCTCCCTCTGTTTCCTC
TCCTTACCTCTTTTCCGCTTTTATGTTATCCCCTGTCCCCTTTCTCTTCT
TCCCTCCCTCGTTCTCCCTCCCATCCTTGCCCTTCCGCTTCCCTTTCTTC
TTCCTTTCTTCTCCTCTTCACTTCTTGTTTCCCTTTGTTTTCTTCTCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_j13.b1 MSMg01no415_j13.b1 CHROMAT_FILE:
MSMg01no415_j13.b1 PHD_FILE: MSMg01no415_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:01 2005
         (451 letters)



>mm_chr4_140471737_140472587
          Length = 851

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgacttccgaaggccatgtcttgggactcgtgcatgacttcctgctgaagga 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggaattcctgactactgaaggccatgtcttgggactcgtgcatgacttcctgctgaagga 592

                                                                       
Query: 64  gaaatggtttggggattgtgagaactcagcaagactcagggtagggagggcattggctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaaatggtttggggattgtgagaactcagcaagactcagggtagggagggcattggctgc 532

                                                                       
Query: 124 tctggctgctagatatggaagtctatgtaggacaatttataccctgacattctaactcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tctggctgctagatatggaagtctatgtaggacaatttataccctgacattctaactcaa 472

                                                                       
Query: 184 cagggtggccgtctggagacttttaggagatggcgaaggttgcacggggcatcaggggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cagggtggccgtctggagacttttaggagatggcgaaggttgcacggggcatcaggggct 412

                                                                       
Query: 244 ctaatcaactatgaatggtggccttttattatgtgagagagaaaataaaggggcacaggt 303
           ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 411 ctaatcaactatgaatggtggccttttaagaagtgagagagaaaataaaggggcacaggt 352

                                                                       
Query: 304 agcaggtgccagggcgaccagggggtggaggtgccaggactggcagtttgggtaaaccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agcaggtgccagggcgaccagggggtggaggtgccaggactggcagtttgggtaaaccag 292

                                                                       
Query: 364 gtttgacggttcctaagaaccaccgtgggtctgggggctctggaaggattcttgtgggat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtttgacggttcctaagaaccaccgtgggtctgggggctctggaaggattcttgtgggat 232

                                       
Query: 424 ttgaaatgactgcagtacaggcctgagt 451
           ||||||||||||||||||||||||||||
Sbjct: 231 ttgaaatgactgcagtacaggcctgagt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_j13.g1 MSMg01no415_j13.g1 CHROMAT_FILE:
MSMg01no415_j13.g1 PHD_FILE: MSMg01no415_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:02 2005
         (241 letters)



>mm_chr4_140353997_140354637
          Length = 641

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatgcgaacaacagaggggcgtgtatacagacattgccctgcttgtgtcttctttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatgcgaacaacagaggggcgtgtatacagacattgccctgcttgtgtcttctttgc 260

                                                                       
Query: 61  agcccctgtatcctcatcctggagcagaggtgaagcgcacctgggcatctcactgggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcccctgtatcctcatcctggagcagaggtgaagcgcacctgggcatctcactgggcaa 320

                                                                       
Query: 121 gccatgacccttccggtctccagaggatgctgttcactttagaagccagcttctttgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatgacccttccggtctccagaggatgctgttcactttagaagccagcttctttgagc 380

                                                                      
Query: 181 atcatgtagggactccctcaatcgcagttagagatttattgggaagggtctgaatttgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcatgtagggactccctcaatcgcagttagagatttattgggaagggtctgaatttgg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)