XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAGGAGAATAATTTTGCTGCTAGTGTCAAAGATAGTCTTTATAGTAGA
ATTTTAACTGATCTCAATAATGAGAGTAGCTGTTACTAAAAACTATTCTA
ACTGAACCAGCAGTGATATGATTATCAAGAATGCCAGGAAGACAGTAGTT
ACCTTTCCCTCGGTAATTAGAATGTTTTGCTAAGTATATAGGTATAGCTT
TCTGAGTGAACTTATTAAAATATATCAGAGGCTAAATATGAAGAAAAATA
AATTCAACTGGCAAATCCTGTATCTGGTTGTTTGTTTTTCTTGTGTCTAA
CTTTTGGAATAGATGTCTAGGTGGTTCTTATTTTCTTGGCCTCTGGTCAT
ATAAGAGAAATGAAAGAAGGGCATGCTGTTGGTAGTTTTTATTTAAACTG
CTTTTAAGAAATCAAAAAATCCATATCTTACATCCTGTGAAAACTCATTC
TTGGCATTTCCATGGNAACAAGACTTTTACCAGGGAGTTAACTGAAATTT
AGCTGCATATACTATTTCCTTGTGATTCATACTTCCCCAACAATGCAAAC
GTCCCACTAATACATGCTTTACCTTAACATTTTATACTTCCATTTCATCC
CCAACCGGACTAAAGGTTTCCCTAAATAAATTTTTGGGTCCCCTCGACGG
TCTTTTCTCCCCTCTTCCTCCACCTGGTCTTTN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAAAAGTTGTCCTATATGTAGTAACAGTT
AATTTCAACTGTCAAATTGATGACTTCCTGAATTTTTTGGGACATGTCTC
TGATGATGCCTATAAGAAATTATCTTCATTTGGATAATTGAGGTGGAACA
ACTTGCTCGTTGTGGATGGCACAGTTCCAAGGCAGGAATTCTGGATTCAT
GAACAGAGAACGTGAGCTGAGCATGAGCATTGATCACTCTCATTTTCCTA
ACAAACATACAATGATCAGCTTACTCAAGCTCCAGAAGGAGCCTTGACTT
TTCTGCCATAATAGATTTTACTCTTGAACTGTGAGATGAAATAAGTTCTC
CCTCCCTTGAATTGCTTTTGTTGGGGCATTTTTATCCCAGCAATTGAAAA
TTAGGTAGAGCATGCAGCACTAGATATATCATTTATATGTAAATATTTGC
CTTAAACAACAGGATTCATGTGACTGTACCATAGTTCTACATTATGTAGG
TGAAAATAACACTTATCTCATGTTACAGTAAGAACACAATACATGCAACA
TAACTTATTTCCTCTGTTTAATTACGAATTATTAATCTATTAAAGAGACC
TTTTTTGCATTCTATGTATCCCGCCTAATAATCGAAAACTAGGACCCCAT
GATGAACCAGAAAAACCTGACCC

Query= MSMg01no415_l04.b1 MSMg01no415_l04.b1 CHROMAT_FILE:
MSMg01no415_l04.b1 PHD_FILE: MSMg01no415_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:09 2005
         (486 letters)



>mm_chr4_110329716_110330601
          Length = 886

 Score =  920 bits (476), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaaggagaataattttgctgctagtgtcaaagatagtctttatagtagaatt 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcagaaggagaataattttgctgctagtgtcaaagatagcctttatagtagaatt 263

                                                                       
Query: 64  ttaactgatctcaataatgagagtagctgttactaaaaactattctaactgaaccagcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaactgatctcaataatgagagtagctgttactaaaaactattctaactgaaccagcag 323

                                                                       
Query: 124 tgatatgattatcaagaatgccaggaagacagtagttacctttccctcggtaattagaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatatgattatcaagaatgccaggaagacagtagttacctttccctcggtaattagaat 383

                                                                       
Query: 184 gttttgctaagtatataggtatagctttctgagtgaacttattaaaatatatcagaggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttttgctaagtatataggtatagctttctgagtgaacttattaaaatatatcagaggct 443

                                                                       
Query: 244 aaatatgaagaaaaataaattcaactggcaaatcctgtatctggttgtttgtttttcttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatatgaagaaaaataaattcaactggcaaatcctgtatctggttgtttgtttttcttg 503

                                                                       
Query: 304 tgtctaacttttggaatagatgtctaggtggttcttattttcttggcctctggtcatata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtctaacttttggaatagatgtctaggtggttcttattttcttggcctctggtcatata 563

                                                                       
Query: 364 agagaaatgaaagaagggcatgctgttggtagtttttatttaaactgcttttaagaaatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagaaatgaaagaagggcatgctgttggtagtttttatttaaactgcttttaagaaatc 623

                                                                       
Query: 424 aaaaaatccatatcttacatcctgtgaaaactcattcttggcatttccatggnaacaaga 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 aaaaaatccatatcttacatcctgtgaaaactcattcttggcatttccatggtaacaaga 683

              
Query: 484 ctt 486
           |||
Sbjct: 684 ctt 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_l04.g1 MSMg01no415_l04.g1 CHROMAT_FILE:
MSMg01no415_l04.g1 PHD_FILE: MSMg01no415_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:09 2005
         (491 letters)



>mm_chr4_110497162_110498052
          Length = 891

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 183 aacagagaacgtgagctgagcatgagcattgatcactctcattttcctaacaaacataca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 aacagagaacgtgagctgagcatgagcattgatcactctcattttcctaacaaacataca 832

                                                                       
Query: 243 atgatcagcttactcaagctccagaaggagccttgacttttctgccataatagattttac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atgatcagcttactcaagctccagaaggagccttgacttttctgccataatagattttac 772

                                                                       
Query: 303 tcttgaactgtgagatgaaataagttctccctcccttgaattgcttttgttggggcattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcttgaactgtgagatgaaataagttctccctcccttgaattgcttttgttggggcattt 712

                                                                       
Query: 363 ttatcccagcaattgaaaattaggtagagcatgcagcactagatatatcatttatatgta 422
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttatcccagcaattgaaaaataggtagagcatgcagcactagatatatcatttatatgta 652

                                                                       
Query: 423 aatatttgccttaaacaacaggattcatgtgactgtaccatagttctacattatgtaggt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aatatttgccttaaacaacaggattcatgtgactgtaccatagttctacattatgtaggt 592

                    
Query: 483 gaaaataac 491
           |||||||||
Sbjct: 591 gaaaataac 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)