Query= MSMg01no416_k09.b1 MSMg01no416_k09.b1 CHROMAT_FILE:
MSMg01no416_k09.b1 PHD_FILE: MSMg01no416_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:19 2005
(251 letters)
>mm_chr4_128333405_128334055
Length = 651
Score = 449 bits (232), Expect = e-131
Identities = 248/254 (97%), Gaps = 3/254 (1%)
Strand = Plus / Plus
Query: 1 tttgtgaacctcactcctggtctttgtcaccggagaaaaggttcaacaagtggaagcaga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgaacctcgctcctggtctttgtcaccggagaaaaggttcaacaagtggaagcaga 260
Query: 61 aaggagtggtttcaacggctccaaggtagagagcctggccctgggcacaatgctcagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aaggagtggtttcaacggctccaaggtagagagcctggccctgggcacaatgctcagaaa 320
Query: 121 aaaaaaaaaaaaaa--tcaaaaatcaaaaaaaa-ggaaagaaaagaaagggagagaggga 177
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaaaaaaaaatcaaaaatcaaaaaaaaaggaaagaaaagaaagggagagaggga 380
Query: 178 gggatcacagctagggaggttgcacatgcctgtaatcctaacacaagcaactgaatgagg 237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggatcacagccagggaggttgcacatgcctgtaatcctaacacaagcaactgaatgagg 440
Query: 238 caggagaatctcaa 251
||||||||||||||
Sbjct: 441 caggagaatctcaa 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no416_k09.g1 MSMg01no416_k09.g1 CHROMAT_FILE:
MSMg01no416_k09.g1 PHD_FILE: MSMg01no416_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:19 2005
(458 letters)
>mm_chr4_128468173_128469028
Length = 856
Score = 859 bits (444), Expect = 0.0
Identities = 454/458 (99%), Gaps = 2/458 (0%)
Strand = Plus / Minus
Query: 1 ctaaagcaaacgaccaggaaccgcagctggagcaatctcgacttccacgctaacgtagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctaaagcaaacgaccaggaaccgcagctggagcaatctcgacttccacgctaacgtagca 597
Query: 61 ccctagaggtgctgggcggcctccttcctcccttcaagccccagcctcttcacctataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccctagaggtgctgggcggcctccttcctcccttcaagccccagcctcttcacctataag 537
Query: 121 aagaggtagagaggggtgccttttgtgcccccttatcaagcaaagatcacaaaagagatc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 536 aagaggtagagaggggtgccttttatgcccccttatcaagcaaagatcacaaaagggatc 477
Query: 181 catataaaagctctttctgaaaacactcagattagactgtgtccgagtggcggctgtcct 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 476 catataaaagctctttctgaaaacactcagattagac--tgtccgagtggcggctgtcct 419
Query: 241 cagactctgccacggttccaggagggacttccaggctcattggagcaagccaggttgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagactctgccacggttccaggagggacttccaggctcattggagcaagccaggttgcag 359
Query: 301 ttatttctttgtggtctaaagctgcaataccaggtagggtttgcaatcagaagtgatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttatttctttgtggtctaaagctgcaataccaggtagggtttgcaatcagaagtgatttc 299
Query: 361 tgaatgattactccatctacctggataggaagcaatgagcgagggaacacctgtgtgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgaatgattactccatctacctggataggaagcaatgagcgagggaacacctgtgtgtac 239
Query: 421 ccactctctgcacatcatcacttgactgacaggaacca 458
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccactctctgcacatcatcacttgactgacaggaacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 856
Length adjustment: 10
Effective length of query: 448
Effective length of database: 846
Effective search space: 379008
Effective search space used: 379008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
