Query= MSMg01no416_k18.b1 MSMg01no416_k18.b1 CHROMAT_FILE:
MSMg01no416_k18.b1 PHD_FILE: MSMg01no416_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
(598 letters)
>mm_chr4_87733709_87734706
Length = 998
Score = 1104 bits (571), Expect = 0.0
Identities = 585/591 (98%), Gaps = 3/591 (0%)
Strand = Plus / Plus
Query: 11 gaattcttttagatatgacaccaaatcagttaacaatagataaatgggattagatcaaac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttttagatatgacaccaaatcagttaacaatagataaatgggattagatcaaac 267
Query: 71 caaaaacctgtacaacaaaggagatcatccaccaagtaaagagacaatctatggaatgga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caaaaacctgtacaacaaaggagatcatccaccaagtaaagagacaatctatggaatgga 327
Query: 131 aagattacttgcaatggaatatatccaaaagagattcacattaaggacacacgaggaact 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagattacttgcaatggaatatatccaaaagagattcacattaaggacacacgaggaact 387
Query: 191 caagcaaattaatagcaaaacaaacaaaccttaataaaaagtgaacccagcaggcatggc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caagcaaattaatagcaaaacaaacaaaccttaataaaaagtgaacccagcaggcatggc 447
Query: 251 tgctggaagagaagagtaattccagatacttgctaggtagaggcagggaaagcataagtt 310
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 448 tgctggaagagaagagtaattccagatacttgctaggtagaggcagggagagcataagtt 507
Query: 311 taaggccaacttgggggtacagaatgagttcaatgatagtataggtaactatgttctcgt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taaggccaacttgggggtacagaatgagttcaatgatagtataggtaactatgttctcgt 567
Query: 371 ctcaaaatacaaca---aagaagggctgatgctatagctcagccaagaagcttgtctcat 427
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctcaaaatacaacatcaaagaagggctgatgctatagctcagccaagaagcttgtctcat 627
Query: 428 gtgtctgaggcccaatccccagttatctcagctaataaagcctttatagaagatcaccca 487
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtgtctgaggcccaattcccagttatctcagctaataaagcctttatagaagatcaccca 687
Query: 488 aacatagcaactagtactgtcttataagctacaattccacttcagcagagtctccctgta 547
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 aacatagcaactagtactgtcttataagctacaattccacttcagcatagtctccctgta 747
Query: 548 caggaccattctctgagccaaactgctaccatctttaagagttctactgga 598
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 caggaccattctctgagccaaactgctaccatctttaagagttctactgga 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_k18.g1 MSMg01no416_k18.g1 CHROMAT_FILE:
MSMg01no416_k18.g1 PHD_FILE: MSMg01no416_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:21 2005
(477 letters)
>mm_chr4_87908306_87909184
Length = 879
Score = 886 bits (458), Expect = 0.0
Identities = 473/479 (98%), Gaps = 2/479 (0%)
Strand = Plus / Minus
Query: 1 tggggttacaaatgcaattcagcacttcttgctttttgtgggatacagggataaagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tggggttacaaatgcaattcagcacttcttgctttttgtgggatacagggataaagctgt 620
Query: 61 aacctgcaaagccacctccttacactgatttttaaggccatctcttccttttc-tttttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 aacctgcaaagccacctccttacactgatttttaaggccatctcttccttttcttttttt 560
Query: 120 taaatgaaggtaagactccaaggtgacaaaggaaaatagaaattcaatcaatatagctta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taaatgaaggtaagactccaaggtgacaaaggaaaatagaaattcaatcaatatagctta 500
Query: 180 agaactacctaaccacatctcaaaaagaacccaaagacaactacagtaaggttgtccaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agaactacctaaccacatctcaaaaagaacccaaagacaactacagtaaggttgtccaga 440
Query: 240 agataaagaattgaaagcattgaattaagtatttactagcaaaagaacaaagtaccatcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agataaagaattgaaagcattgaattaagtatttactagcaaaagaacaaagtaccatcc 380
Query: 300 acctagatttggccatgatggcaggcacatgcctataaatcccaatgctctagggact-a 358
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 379 acctagatttggccatgatggcaggcacatgcctataaatcccaatgccctagggactga 320
Query: 359 catgggaagactatgagttaaagaccaatctaagctattttttaagaacatatccacact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catgggaagactatgagttaaagaccaatctaagctattttttaagaacatatccacact 260
Query: 419 cccctgaaaaacgccgagcaatttanatatcattcacttcagttttannatagactaca 477
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 259 cccctgaaaaacgccgagcaatttaaatatcattcacttcagttttaaaatagactaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 879
Length adjustment: 10
Effective length of query: 467
Effective length of database: 869
Effective search space: 405823
Effective search space used: 405823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
