Query= MSMg01no416_l19.b1 MSMg01no416_l19.b1 CHROMAT_FILE:
MSMg01no416_l19.b1 PHD_FILE: MSMg01no416_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:26 2005
(576 letters)
>mm_chr4_108418481_108419456
Length = 976
Score = 1102 bits (570), Expect = 0.0
Identities = 574/576 (99%), Gaps = 2/576 (0%)
Strand = Plus / Plus
Query: 1 ggctatacaataagatcctgtcttggtgggatggaaacggaaaaaggaatgagaagaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctatacaataagatcctgtcttggtgggatggaaacggaaaaaggaatgagaagaagg 260
Query: 61 gaaagagaaaacaaaaacaggtgctagatccatcaacatgaaacatacaagatagacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagagaaaacaaaaacaggtgctagatccatcaacatgaaacatacaagatagacaat 320
Query: 121 tacactgagaaactacagtagaatgagaaactgaaaagcaataatgaaaaaggaccaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacactgagaaactacagtagaatgagaaactgaaaagcaataatgaaaaaggaccaata 380
Query: 181 aataacctgccaatgagtacaaagtttcttccagggatgaagttgttctaaaattagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataacctgccaatgagtacaaagtttcttccagggatgaagttgttctaaaattagaaa 440
Query: 241 ctgtagtggtaatcactgcacagctctataatataataaaaattgttaaagagtacactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtagtggtaatcactgcacagctctataatataataaaaattgttaaagagtacactt 500
Query: 301 tcaaagaggcaaactttatggtatgtacatatctcaagaaagtcatgcaggaaacaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaagaggcaaactttatggtatgtacatatctcaagaaagtcatgcaggaaacaagaa 560
Query: 361 ttaaagcgctataaatttcaacctacttgataataatatgcttgttctgctatatccatc 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaagc--tataaatttcaacctacttgataataatatgcttgttctgctatatccatc 618
Query: 421 agcctgatatataaaccatttcatttaatcttctattataggatgaaaaagtagcaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcctgatatataaaccatttcatttaatcttctattataggatgaaaaagtagcaaatg 678
Query: 481 ttcctctcacaatcaataaattaatttttcagagattatgtaagtattttgcctgaatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcctctcacaatcaataaattaatttttcagagattatgtaagtattttgcctgaatgt 738
Query: 541 atatatgcgaaccacatgtatgccttgtacccacgg 576
||||||||||||||||||||||||||||||||||||
Sbjct: 739 atatatgcgaaccacatgtatgccttgtacccacgg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_l19.g1 MSMg01no416_l19.g1 CHROMAT_FILE:
MSMg01no416_l19.g1 PHD_FILE: MSMg01no416_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:26 2005
(588 letters)
>mm_chr4_108594196_108595183
Length = 988
Score = 567 bits (293), Expect = e-165
Identities = 299/301 (99%)
Strand = Plus / Minus
Query: 288 cactggctacaggcttttaaccaggcttgcagaatcaaatatggactccctcctgcgaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 cactggctacaggcttttaaccaggcttgcagaatcaaatatggactccctcctgcgaaa 929
Query: 348 tgaggctctgatctgaccaaagaggttgccccttgtgactggcttgctaccattgcacca 407
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 928 tgaggctctgatctgaccaaagaggttgcccctggtgactggcttgctaccattgcacca 869
Query: 408 ggggaaacttctttaggaaagctggtgggtggtgctgagcacagatccgcacttgatggt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ggggaaacttctttaggaaagctggtgggtggtgctgagcacagatccgcacttgatggt 809
Query: 468 aattctcacccagaagcctggcactctgacatgagagccagctgtcaggaaagaaacttc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aattctcacccagaagcctggcactctgacatgagagccagctgtcaggaaagaaacttc 749
Query: 528 cctcttggttccaacttgatctttaagtcttgtgagcgaggcataaagtgaacaaaaggg 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 748 cctcttggttccaacttgatctttaagtcttgtgagcgaggcataaagtgagcaaaaggg 689
Query: 588 t 588
|
Sbjct: 688 t 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
