Query= MSMg01no417_e05.b1 MSMg01no417_e05.b1 CHROMAT_FILE:
MSMg01no417_e05.b1 PHD_FILE: MSMg01no417_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:06 2005
(696 letters)
>mm_chr4_108503799_108504896
Length = 1098
Score = 1315 bits (680), Expect = 0.0
Identities = 690/694 (99%), Gaps = 2/694 (0%)
Strand = Plus / Plus
Query: 5 gaattctagtcttgacagtgacactcctgctttggaaaacaacataccatgcgctaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtcttgacagtgacactcctgctttggaaaacaacataccatgcgctaaaaa 264
Query: 65 aaaa--gctaatttaacagtcttgtttgacttgttctgtggcttaacagatcattactga 122
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaagctaatttaacagtcttgtttgacttgttctgtggcttaacagatcattactga 324
Query: 123 gatgtgaaggagggaataagggaataggctattattaaactttttttttcctaattctaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgtgaaggagggaataagggaataggctattattaaactttttttttcctaattctaa 384
Query: 183 ctttgtaattgcatcattcagatgataaggatcctgttctttacatttgaaagaagaaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttgtaattgcatcattcagatgataaggatcctgttctttacatttgaaagaagaaaa 444
Query: 243 aaagaagactcaaaagatcatgtaaattactaaccattctgtactgaagctgaacttaaa 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaagactcaaaagatcgtgtaaattactaaccattctgtactgaagctgaacttaaa 504
Query: 303 gaactgacctgtatatatcgcagctgtaaggctgaatccatttcacaaataaaaattaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaactgacctgtatatatcgcagctgtaaggctgaatccatttcacaaataaaaattaga 564
Query: 363 acctatggcttctcactttgttcaaaattgtatcacaatggtcaagcaggtaaaagcttt 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 acctatggcttctcactttgttcaacattgtatcacaatggtcaagcaggtaaaagcttt 624
Query: 423 tgcatgggagttgtgtgtagaatccaaacagtcttttaggtgtgtgccaatcttagctgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcatgggagttgtgtgtagaatccaaacagtcttttaggtgtgtgccaatcttagctgt 684
Query: 483 gcagcagactgaaatgtgctgatagaaacctcaaccttgcattcaaacatccacaaaaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcagcagactgaaatgtgctgatagaaacctcaaccttgcattcaaacatccacaaaaga 744
Query: 543 gctacagccatgaacttatagtgaaataacacagcacttaaggaatttcttgcaaaaagg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctacagccatgaacttatagtgaaataacacagcacttaaggaatttcttgcaaaaagg 804
Query: 603 aggtcaggagagaatattaaaactaagcacaggactagccctttgtgactatttgcattt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggtcaggagagaatattaaaactaagcacaggactagccctttgtgactatttgcattt 864
Query: 663 taggtaacattcctaaagaaaagagttggcagtt 696
||||||||||||||||||||||||||||||||||
Sbjct: 865 taggtaacattcctaaagaaaagagttggcagtt 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1098
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1088
Effective search space: 746368
Effective search space used: 746368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_e05.g1 MSMg01no417_e05.g1 CHROMAT_FILE:
MSMg01no417_e05.g1 PHD_FILE: MSMg01no417_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:06 2005
(484 letters)
>mm_chr4_108542323_108543206
Length = 884
Score = 920 bits (476), Expect = 0.0
Identities = 482/484 (99%)
Strand = Plus / Minus
Query: 1 caggccagccagggctacatagtgagactaaaaaccagggacagctctcagaactaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 caggccagccagggctacatagtgagactaaaaaccagggacagctctcagaactaaata 653
Query: 61 cattgtgttcgtcaaagcagccctcataactaaatatgttgtgtttgtcaaaggttcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cattgtgttcgtcaaagcagccctcataactaaatatgttgtgtttgtcaaaggttcttc 593
Query: 121 cttcagatacatttccatggggttgaggaatggttaacagtcctggaatgtatcaggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttcagatacatttccatggggttgaggaatggttaacagtcctggaatgtatcaggtaa 533
Query: 181 gtcagggagcctgctggggaaggctaatagggaagcactgtgaccctctgcaaaggttta 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gtcagggagcctgctgaggaaggctaatagggaagcactgtgaccctctgcaaaggttta 473
Query: 241 actcgtactccctcttgtgttctaagtgggaagtgcactccctctggactgacgagtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actcgtactccctcttgtgttctaagtgggaagtgcactccctctggactgacgagtagc 413
Query: 301 catggtgctgaagtaagcctagctaccgagcagactagaagggaaggaaggtctgacaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catggtgctgaagtaagcctagctaccgagcagactagaagggaaggaaggtctgacaag 353
Query: 361 caactactgggttgatttttggtatctcatctttttctctcacgatccattcaacagaag 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cacctactgggttgatttttggtatctcatctttttctctcacgatccattcaacagaag 293
Query: 421 caaaagcccaagtgacttttctaagacctaaacactaagaaaacagggtgagggtggggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caaaagcccaagtgacttttctaagacctaaacactaagaaaacagggtgagggtggggg 233
Query: 481 tgcg 484
||||
Sbjct: 232 tgcg 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
