BAC Information

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BAC

Clone NameMSMg01-417G24
Chromosome4 (Build37)
Map Location 115,710,444 - 115,710,907
singlet/doubletsinglet
Overlap geneNsun4
Upstream geneStil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah
Downstream geneUqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417G24.T7 (MSMg01no417_g24.b1)MSMg01-417G24.TJ (MSMg01no417_g24.g1)
ACCAG513017AG513018
length799787
length of high quality
(start - end)
468 (45 - 512)363 (74 - 436)
definitionCHROMAT_FILE: MSMg01no417_g24.b1 PHD_FILE: MSMg01no417_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:19 2005CHROMAT_FILE: MSMg01no417_g24.g1 PHD_FILE: MSMg01no417_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCCCAGTTTACTTGACATTTGAAATAGCTTTGGTCCTTGAAGAT
ATCTTCATTAATTTATCTGTTGAAGAAATAGTAGTGTGCAAAGGAAGTGT
TAGACACTCTAGATGCAGAGAAAAATGCTACCTCAGGCCTCGACAGACCT
GATAACCCCATTCTTCTTCAGTCATATTTGTCCATCAGTTGGAGAGAGTC
CAGCACTCTGCATGTCCATCACCCCTCCCTTCCATTCACAGGTTTCCTCC
ATCCTACCCTTCCCAAGTTAAAGTTTATTTCCAATAATAAAATGCTTATT
TGAACATATTTTTCTCCATGTTTTTTCAAGGGGGAAGTGTAAAAGCACAC
TGGAGGCTGATATGCGCTAGCGAGCCATCCTGGCATATGGCTGGTAACCA
CACATTGGACCATTTCTGCTGTAGCAATGCTTGTGCCATAGCTGATGTTG
AACAGCTCCTGCCCTGGATGAGGCTGGCAGCTTTCACAGTTGACACTGAT
AAGCGATATCTGTGGTGTATTGGTACAAAATTNGGATCTATTTGCCGCTT
GGTTTCTAGACTCCTTGAAATCTGGTGGGCCTNGGCATGAGGNAAAAGGA
CCCCAAACCCTTCCTCCATCGCCGAATGCCAGCACTTTTTGGAATGGAAA
AATTTTCCAAGTTTCCCTCTTTTCCTGGCCTTTTGCCCACTTTCTTTTTA
AAGGAGTTCTTGGATTTTAACCGGCCCCCCCTATCTTTTTTTAAACGAA
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAATTTTGGGTCCCTTTTAAAAAAC
ACAAGTATTATAAGAATATGCTTTTGTTTAAGTCCCAGGTGTGGGGATGT
GGAGTGGCTTCAGACTGCAGCAGCTGACTATGATTTGCCTCGTGCTCTAG
CAGAGGCATGGTTTTGCCAGCTATAGATAGTTTCTGCGATTGTGTGACGT
TGTTTGGAATTCTGCAAACTTTTCAGAGGGTATATAAGTGCTAGAACCCC
CGATAAGCTGTTGGTCATTCATGTTTGTTGACTGCAGTTTGATACTAGTT
GTGCTCAAAGAAGGAAGAAGTCAGATTCAGAGATCTCCCCCCACCCCATC
CCTCTTTCTCTCCTTTCTAGTGATGGGGGTGGGTGAAGGNNNAANAANNN
TTTTNACTTCCTTCCTTTTTCTTATTTATATTCTTCCCCCCTTTCCCTTG
TCTTCTTTTGCATCCCCTTTTTTTTCCCCTCTTTTTCCCCCCTTCCCTTT
TCCCTTTTTCTCTTTTCCTCCTTTCTCTTTTTTTTTTTCCCTTTCCTTTT
TTCCTTCCCCTCCTCTTCTTTTTCTTTTCCCGCTTATGTCTCCCCCCCTT
TTTTTCCCCCCTTTCCTTCTCTTCTTTTTTTTCCCTCCCCTTTCCTCCTT
TTTTTACTTTTACTTCCCCCCTCTCCTCTTTTTTTTTTCTTTCCCTCCCT
TTTCTCCTTTTTCCCACTTTTTTCTCCTTTTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_g24.b1 MSMg01no417_g24.b1 CHROMAT_FILE:
MSMg01no417_g24.b1 PHD_FILE: MSMg01no417_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:19 2005
         (468 letters)



>mm_chr4_115710240_115711107
          Length = 868

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctcccagtttacttgacatttgaaatagctttggtccttgaagatatcttcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattccctcccagtttacttgacatttgaaatagctttggtccttgaagatatcttcat 609

                                                                       
Query: 65  taatttatctgttgaagaaatagtagtgtgcaaaggaagtgttagacactctagatgcag 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taatttatttgttgaagaaatagtagtgtgcaaaggaagtgttagacactctagatgcag 549

                                                                       
Query: 125 agaaaaatgctacctcaggcctcgacagacctgataaccccattcttcttcagtcatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agaaaaatgctacctcaggcctcgacagacctgataaccccattcttcttcagtcatatt 489

                                                                       
Query: 185 tgtccatcagttggagagagtccagcactctgcatgtccatcacccctcccttccattca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtccatcagttggagagagtccagcactctgcatgtccatcacccctcccttccattca 429

                                                                       
Query: 245 caggtttcctccatcctacccttcccaagttaaagtttatttccaataataaaatgctta 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caggtttcctccatcccacccttcccaagttaaagtttatttccaataataaaatgctta 369

                                                                       
Query: 305 tttgaacatatttttctccatgttttttcaagggggaagtgtaaaagcacactggaggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttgaacatatttttctccatgttttttcaagggggaagtgtaaaagcacactggaggct 309

                                                                       
Query: 365 gatatgcgctagcgagccatcctggcatatggctggtaaccacacattggaccatttctg 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gatatgagctagcgagccatcctggcatatggctggtaaccacacattggaccatttctg 249

                                                       
Query: 425 ctgtagcaatgcttgtgccatagctgatgttgaacagctcctgc 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctgtagcaatgcttgtgccatagctgatgttgaacagctcctgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)