BAC Information

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BAC

Clone NameMSMg01-417K05
Chromosome4 (Build37)
Map Location 7,779,205 - 7,779,791
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K05.T7 (MSMg01no417_k05.b1)MSMg01-417K05.TJ (MSMg01no417_k05.g1)
ACCAG513171AG513172
length741757
length of high quality
(start - end)
593 (48 - 640)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no417_k05.b1 PHD_FILE: MSMg01no417_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:34 2005CHROMAT_FILE: MSMg01no417_k05.g1 PHD_FILE: MSMg01no417_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCGTTAATTCACACTATTCATTTGGGTTTCACTTTTTGGTT
CATTTTGCCAGGCTTATCTGGTAGATACAAGTAACTTTAAAAATACATGT
ATCTCCCCGTTGAACTGCAGTACTTTCAGCTGTAGCTCCTTATTTGAACA
GCTTGAGGACTAATTTGAATCGCACTTCTCTTGTGGGTGTTCCAAAAGCT
TGTGCTATCTCAGGGAGTTGCCTTGTGGAGACATTAAAGATGTTTTTTAA
ATGAAGCACATCAAGATTCGCTAAATTACATATGGTTTGATCTAGGAAAG
GACAATTGGAGACTTCATTAAAATAGATTTATTCCAACTTCATGTATGGA
AATAAATTTTCTTGTGATAACTTGGTCTGTGCCCATCCAGATTGTAGCAT
TTCCCTAGTTTCTAAATTAAATGTTTCTACATGTGAATCTTGGCTCTATA
TGGGCATATATTAAAAGGCTTAGTCATCATTATTTTAAGTATCCCAGAAT
TGAGTCAGGTTTCTCAGGAGCTTTGCAGCTTACTCGCTTGCTTTGACTTG
GTTCACTTTCAATTATCTTCCCTTCCTCTTCTCCTGTGCCTCTGCCTTTA
TAAAAAATATCTATTTCAACTTTAGGTAAGAACTAAACTATCCTCTGTTG
CATAAATCTTGGTCTTCTCTGCATTGTTGCCTTCAAATGCN
CCCGATGATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGATTACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACATATGCTCCACTATGTTCATAGTAGTCTTATTTATAATAGCCAG
AAGCTGGAAAGAATCTAGATGCCCCTCAATAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAA
TTTATGATACTCCTACCCCTATGCATGGACCTGTATCCCCTCCTCCTGAT
CGAGTTCATCCCTCCTTACCCATTCTCCCTCTATATGTACTCTCCGATTC
TCTGCACATTTAGCCCCACCCCCCAGGTAACTCCCTGTATTTAATTATTT
CCCTCTTGTTAACTTTCCTTGACTCCTCTTCCCCCTATGCATCACCTGCC
TACCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k05.b1 MSMg01no417_k05.b1 CHROMAT_FILE:
MSMg01no417_k05.b1 PHD_FILE: MSMg01no417_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:34 2005
         (593 letters)



>mm_chr4_7779001_7779993
          Length = 993

 Score = 1120 bits (579), Expect = 0.0
 Identities = 585/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcgttaattcacactattcatttgggtttcactttttggttcattttgccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattcactcgttaattcacactattcatttgggtttcactttttggttcattttgccag 732

                                                                       
Query: 65  gcttatctggtagatacaagtaactttaaaaatacatgtatctccccgttgaactgcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcttatctggtagatacaagtaactttaaaaatacatgtatctccccgttgaactgcagt 672

                                                                       
Query: 125 actttcagctgtagctccttatttgaacagcttgaggactaatttgaatcgcacttctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 actttcagctgtagctccttatttgaacagcttgaggactaatttgaatcgcacttctct 612

                                                                       
Query: 185 tgtgggtgttccaaaagcttgtgctatctcagggagttgccttgtggagacattaaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgtgggtgttccaaaagcttgtgctatctcagggagttgccttgtggagacattaaagat 552

                                                                       
Query: 245 gttttttaaatgaagcacatcaagattcgctaaattacatatggtttgatctaggaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gttttttaaatgaagcacatcaagattcgctaaattacatatggtttgatctaggaaagg 492

                                                                       
Query: 305 acaattggagacttcattaaaatagatttattccaacttcatgtatggaaataaattttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acaattggagacttcattaaaatagatttattccaacttcatgtatggaaataaattttc 432

                                                                       
Query: 365 ttgtgataacttggtctgtgcccatccagattgtagcatttccctagtttctaaattaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgtgataacttggtctgtgcccatccagattgtagcatttccctagtttctaaattaaa 372

                                                                       
Query: 425 tgtttctacatgtgaatcttggctctatatgggcatatattaaaaggcttagtcatcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtttctacatgtgaatcttggctctatatgggcatatattaaaaggcttagtcatcatt 312

                                                                       
Query: 485 attttaagtatcccagaattgagtcaggtttctcaggagctttgcagcttactcgcttgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 311 attttaagtatcccagaattgagtcaggtttctcaggagctttgcagcttagtcgcttgc 252

                                                          
Query: 545 tttgacttggttcactttcaattatcttcccttcctcttctcctgtg 591
           ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttgatttggttcactttcaattatcttcccttcctcttctcctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)