Query= MSMg01no417_k17.b1 MSMg01no417_k17.b1 CHROMAT_FILE:
MSMg01no417_k17.b1 PHD_FILE: MSMg01no417_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:37 2005
(393 letters)
>mm_chr4_18418715_18419507
Length = 793
Score = 698 bits (361), Expect = 0.0
Identities = 385/393 (97%)
Strand = Plus / Plus
Query: 1 aataagctatttgacactagtaatgataaaaaacaatatagtacatcagaataaaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataagctatttgacactagtaatgataaaaaacaatatagtacatcagaataaaccttc 260
Query: 61 aattaattgatctgagtcaataccaggtaaaacaaccatgttttaatatgcctaaatcct 120
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 261 aattaattgatctgagtcaataccagggaaaacaaccatgttttaataggtctaaatcct 320
Query: 121 atcattagccaaatgtattactttgtttccagtgaatttcctcccagaaagaaaatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattagccaaatgtattactttgtttccagtgaatttcctcccagaaagaaaatgcat 380
Query: 181 ccagaatgtagaaataacaatattgtttctgtttagtaggtcaaatattttttcatgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaatgtagaaataacaatattgtttctgtttagtaggtcaaatattttttcatgatg 440
Query: 241 tctaatcttatgacctaatgagctatcttctggaatatttttctataaataattacttgc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaatcttaggacctaatgagctatcttctggaatatttttctataaataattacttgc 500
Query: 301 ttaaaagttgttggggggtggggttcccggattccaccaagactggtctgcacaggtgag 360
|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ttaaaagttgttggagtttggggttcccggattccaccaagcctggtctgcacaggtgag 560
Query: 361 agtgtagactgtagaggctaacagcttctggga 393
|||||||||||||||||||||||||||||||||
Sbjct: 561 agtgtagactgtagaggctaacagcttctggga 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_k17.g1 MSMg01no417_k17.g1 CHROMAT_FILE:
MSMg01no417_k17.g1 PHD_FILE: MSMg01no417_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:37 2005
(530 letters)
>mm_chr4_18591427_18592356
Length = 930
Score = 957 bits (495), Expect = 0.0
Identities = 516/525 (98%), Gaps = 4/525 (0%)
Strand = Plus / Minus
Query: 1 tgtctgctgtctcattccccacattatggcttatgccactatgctgaacacttaccaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgtctgctgtctcattccccacattatggcttatgccactatgctgaacacttaccaaaa 643
Query: 61 gttatattaaaggttaaaacatcttttaaatatacaaatctcgtgtatgcaacattcaat 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct: 642 gttatattaaaggttaaaacatcttttaaatatacaaatctcatgtatgcaatatttaat 583
Query: 121 agataattaaaaacagtacttgcagaaataatgctttaaaaggaaagctaataagaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agataattaaaaacagtacttgcagaaataatgctttaaaaggaaagctaataagaatta 523
Query: 181 tataatattaaatgtttatgtagtatattagtttaacttgcttttatcacatatataaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tataatattaaatgtttatgtagtatattagtttaacttgcttttatcacatatataaca 463
Query: 241 gttacaaaacttatttaaactatcagagaaagttctatgctaatttcaatgaagactgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gttacaaaacttatttaaactatcagagaaagttctatgctaatttcaatgaagactgta 403
Query: 301 aaaaccactagtatcaaaatatttttattaaaaatgttttcatatactatctacattatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaaaccactagtatcaaaatatttttattaaaaatgttttcatatactatctacattatg 343
Query: 361 ctcttcactcccacaattcctcccagacactctttaccttcccatcttcccattcatgcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtcttcactcccacaattcctcccagacactctttaccttcccatcttcccattcatgcc 283
Query: 421 attttactctctttataatatgaacaaagaatccaaataatacaaacaaaaccaagaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 attttactctctttataatatgaacaaagaatccaaataatacaaacaaaaccaagaaac 223
Query: 481 acttgctcatttgtgtgtgagcgtgcgcgcacacacacacacaca 525
|||||||||||||||||||| || ||||||||||||||||||
Sbjct: 222 acttgctcatttgtgtgtga----gcacgcacacacacacacaca 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
