Query= MSMg01no417_l06.b1 MSMg01no417_l06.b1 CHROMAT_FILE:
MSMg01no417_l06.b1 PHD_FILE: MSMg01no417_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:40 2005
(436 letters)
>mm_chr4_122768861_122769696
Length = 836
Score = 741 bits (383), Expect = 0.0
Identities = 417/433 (96%), Gaps = 11/433 (2%)
Strand = Plus / Plus
Query: 5 gaattccagatc-ttcttgcctctacttcctaagcatggagatttcaagtacttgtggtt 63
|||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct: 213 gaattccagatcctt-ttgcctctacttcctaagcatggagatttcaag--------gtt 263
Query: 64 tgggtttttattttatttttttcccctgagacaggatttctctgtgtagccatgggtatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgggtttttattttatttttttcccctgagacaggatttctctgtgtagccatgggtatc 323
Query: 124 ccagaactcactctgtaaaccacactggcctcgaactcagagatctgcctgtctctgcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagaactcactctgtaaaccacactggcctcgaactcagagatctgcctgtctctgcct 383
Query: 184 cctgagtgctgggataaagacgtgcaccaccactgctcagcatctttaagttttttgact 243
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 cccgagtgctgggataaagatgtgcaccaccactgctcagcatctttaagttatttgact 443
Query: 244 gtatgctatcggcaaatgtaagcttggaattattttatctctcttgcagattgaactttg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctatgctatcggcaaatgtaagcttggaattattttatctctcttgcagattgaactttg 503
Query: 304 acataaaatatttctcttggtctccaatattgattggttttgtcttgaaattttctaggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acataaaatatttctcttggtctccaatattgattggttttgtcttgaaattttctaggg 563
Query: 364 ctgcagagacagcttagtggttaagaacactggttgctcttgcaaaggaccaagttcaaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgcagagacagcttagtggttaagaacactggttgctcttgcaaaggaccaagttcaag 623
Query: 424 atcccagcacctg 436
||||||||||||
Sbjct: 624 -tcccagcacctg 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_l06.g1 MSMg01no417_l06.g1 CHROMAT_FILE:
MSMg01no417_l06.g1 PHD_FILE: MSMg01no417_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:40 2005
(381 letters)
>mm_chr4_122933563_122934344
Length = 782
Score = 603 bits (312), Expect = e-177
Identities = 356/374 (95%), Gaps = 7/374 (1%)
Strand = Plus / Minus
Query: 5 ttcagtggggggctagcaagaaggctcagtggagccaggcgtggtggtgcacacctttaa 64
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 757 ttcagtggggggctagcaagaaggctcagtggagccgggagtggtggtgcacacctttaa 698
Query: 65 tcccagcacttgggaggcaaaggcaggcggatttctgagttcaaggccagccttgaactg 124
||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||
Sbjct: 697 tcccagcacttgggaggcagaggcaggaggatttctgagttcaaagccagc------ctg 644
Query: 125 gtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaac 184
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 643 gtctacagagtgagttccaggacagccagagctatacagagaaaccctgtctcgaaaaac 584
Query: 185 caaaccaaaacaacaacaacaaaaaagatttgggtttttgaaaactttattgtcattctt 244
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaaaacaaaacaacaacaacaaaaaagatttgggtttttgaaaactttattgtcattctt 524
Query: 245 cactttaggt-aaaaaaatatcccagtttaccatggggagttaactttgtgcagaaatta 303
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cactttaggtaaaaaaaatctcccagtttaccatggggagttaactttgtgcagaaatta 464
Query: 304 gcacccacattgaactaaaaatgttaaacttaattttcctctgtttatttagagaaaaca 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 463 gcacccacattgaactaaaaatgttaaacttaattttcttctgtttatttagagaaaaca 404
Query: 364 gcgtattatatatg 377
||||||||||||||
Sbjct: 403 gcgtattatatatg 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space: 287556
Effective search space used: 287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
