CGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGTTATGTACCTGAGCGTAAAATCAAAGTCACAGTAC
TAAGGCAGGGTCACAGGCCTTAGCCTCAAACAAGCCATCAAGAGTGCGGC
TCTGCCTATGGCTCTTGGTTGCTGAATTCAAATATTTGTGTTGTTCATCT
CATAGCGTTGGACTGAGTACCACTAACCATTTCCCAGGGTCGGAGGTGTC
AAGTTGTATAGGTGGAGTACAGCACCTGCTTCTGAAACCACTGCTGACGT
GTGATGGAGCTTGTGTGGGTGAAGCTTTCCACACCATTCCATGTTGACAG
GCCTCTGCCCCACCTCTGGGGTCAGTCGAAGAGGCTGGGTGGCTGGGTTT
GTTCACCTTCTCCGTGGTGGCTTCCTTGGCAGTAATGACAGTTTCTCTCC
TACCTGCTGCTCCTCTGTTTATCCCTCAGTTGACTGGGAATCAAAAATGC
TAAGGCAGGTGACAAAGAACCTCACAAGTGCTACAGATAGGAAGACAAGG
ACTTCCCTGAGAAACATCCATTTTTCCCCCTGCCCCTGCCTCCGGCTTTC
CAGACCCACTGTCATATTTACTGTATTTCTTTGCTTATTGGAAAGCAGCC
CAGCATGTCTTCTAAGGCAGTAAGAAGAAACATGTTTGTCTCCACAAGCC
TTGCACAGTTAATTGTAATTTTTGGGGGCACAATG

AGGTGCTACTTTTATATTTCTATTGTGTGTGCTCTATTTTACTTTGATTA
TTTCTTTTCATTCATCTATAATTTTCATTTTAGCTTTTTTCTTAGTTCTA
CNTAATCTCTTCCCTACCAATCATTTATATCTTTTTCTTATTCCCGCGTT
TTCTTCCTTCTAAGTAAGATGCACAATACACTTAAGTGCTTCTTTTTCCT
TCCCCTTTTCCCTTTCCTCCCCCTCCTCTTCTCCTCCTTACCTCCACCAC
TCATCTCTTCCTTTCCTCGTTTCTCCCTTTTTCCTTTCCTCACACCACCC
CCTATCCACTCCCTCNNNNTTGAGAGATTCNCTTNCNCNCCNNNNNNNNC
NNNNNGGCTTGAATATTTTTAGGAATTGAGANAGNNTTCTTTTTTATTTN
CNNCNNNCCCCCCCGCCCCTCCCCCCNCCCNNNGGGGGGTGNCNTTGATA
TTTAATTCGCTTCTGTTTTATGATTAATACGGTCCGTCCCTTCCCGCGCG
CCCCCTCCNNAAAAAAAAAAAAAATTATTTTCAAAAACTAGTAGAAGAGT
GGGGGGCGCGGCCTTTTNNTTTATAGAAGAAGAGAGGGACCCCCCCCCCC
CTCAGTGATGGGGAAAAANCGNGGAGGGGGAANNNCACCGGCGGAGATCT
CCCTCCTGGGGGGNAGGGGGNCNGCCGCGGNATCCCCGNNNCCAATTACA
NNGAGCGNGAGCNGNANTGTACNCANNTCGNTAANNAATAAAAGGAAGNN
GGNNCAATTGGNGCCCTTGGACCCGGAANGCGGTCNGGAGCGTCGGTNAG
NNGAANNNAGTTGNCCGCCNGCTCCGTCGGGGTGNNNNNAAAANCCCNNN
ATTCCCNANGGAGNGGNGTAGNNATNGTAAGGGGCGCCTGTGANGCGGTG
GCGC

Query= MSMg01no417_m02.b1 MSMg01no417_m02.b1 CHROMAT_FILE:
MSMg01no417_m02.b1 PHD_FILE: MSMg01no417_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:44 2005
         (547 letters)



>mm_chr4_86881189_86882135
          Length = 947

 Score =  992 bits (513), Expect = 0.0
 Identities = 534/541 (98%), Gaps = 2/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggttatgtacctgagcgtaaaatcaaagtcacagtactaaggcagggtcaca 64
           ||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtcagg-atctgagcgtaaaatcaaagtcacagtactaaggcagggtcaca 263

                                                                       
Query: 65  ggccttagcctcaaacaagccatcaagagtgcggctctgcctatggctcttggttgctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggccttagcctcaaacaagccatcaagagtgcggctctgcctatggctcttggttgctga 323

                                                                       
Query: 125 attcaaatatttgtgttgttcatctcatagcgttggactgagtaccactaaccatttccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcaaatatttgtgttgttcatctcatagcgttggactgagtaccactaaccatttccc 383

                                                                       
Query: 185 agggtcggaggtgtcaagttgtataggtggagtacagcacctgcttctgaaaccactgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggtcggaggtgtcaagttgtataggtggagtacagcacctgcttctgaaaccactgct 443

                                                                       
Query: 245 gacgtgtgatggagcttgtgtgggtgaagctttccacaccattccatgttgacaggcctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacgtgtgatggagcttgtgtgggtgaagctttccacaccattccatgttgacaggcctc 503

                                                                       
Query: 305 tgccccacctctggggtcagtcgaagaggctgggtggctgggtttgttcaccttctccgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgccccacctctggggtcagtcgaagaggctgggtggctgggtttgttcaccttctccgt 563

                                                                       
Query: 365 ggtggcttccttggcagtaatgacagtttctctcctacctgctgctcctctgtttatccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtggcttccttggcagtaatgacagtttctctcctacctgctgctcctctgtttatccc 623

                                                                       
Query: 425 tcagttgactgggaatcaaaaatgctaaggcaggtgacaaagaacctcacaagtgctaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagttgactgggaatcaaaaatgctaaggcaggtgacaaagaacctcacaagtgctaca 683

                                                                       
Query: 485 gataggaagacaaggacttccctgagaaacatccatttttccccctgcccc-tgcctccg 543
           |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 684 gataggaagacaaggacttccctgagaaacgtccattcttccccctgccccctgcctccg 743

            
Query: 544 g 544
           |
Sbjct: 744 g 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)