BAC Information

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BAC

Clone NameMSMg01-417N10
Chromosome4 (Build37)
Map Location 29,331,803 - 29,332,201
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N10.T7 (MSMg01no417_n10.b1)MSMg01-417N10.TJ (MSMg01no417_n10.g1)
ACCAG513324AG513325
length787792
length of high quality
(start - end)		426 (69 - 494)369 (77 - 445)
definitionCHROMAT_FILE: MSMg01no417_n10.b1 PHD_FILE: MSMg01no417_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005CHROMAT_FILE: MSMg01no417_n10.g1 PHD_FILE: MSMg01no417_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGAGGACCGC
GGAANNCNACATCTTCACCCAAAGGCAGCTAGCAGAATACTGACTTCCAG
GAAGCTAAGATGAGGATCTTATAACCCACACCCAAAATGGCACACCTATA
CCAACAGGGCCACACCTTCTAATCATGCCACTTTCTGGGCAGGGCTGTAC
TGTTAGTTGGCTGTCCTGACCATGAAGACCTCCCAGCTTCTCCTGATCCA
TAAACACTTCTAGGCTGACAACAGCCTTCTTTGGTCTCTTGGAGCTGCCA
ATACCAAGCACCTCCTAACTGTGTTCCTCATTCTGGAATTATTAACTCAA
CAAGGTCATCCTGTATTAACAACCTTCCTCAACCATTCATTTTGCTACTT
GTCTTCTTTGTTAATCTCCATGTTATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATGATAGATAGATAGATAGATAGATCCG
CTTCCCCCCCTTCTTCCTTTTTCCTTCCCAAATTTTTTTATCCCCCCCCT
TATCTTTCTTTCCCTCTACTCCCCCCTTTTTTTCCTTTTCCTCTTCCCCC
TTTTTTCCTCCCTTCTTCTCCCCTTTCTTCCTTTTCTTCTCCCTATTCTT
TTCTCCCCCCTCCTATCCACCTATATAAATATTCCCTTATATTCTCCTTT
CTACCACCCTTTCCACCCTCATCTTCCATTTTTACCCCACTTTACCCCCC
CACTTTTTACCCTTCCTCCCACCCTCTCTCACTTTTN

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCGCCAATT
TTTAATGGGGTTATTTGACTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTGTCTGATTCAGGATAGGTAAAGATCCTT
TCCCAATCTGCTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAATTTTATGATGCATGGGGCAATTTCAATATTTTTGT
ATCTGTTGAGGGCTGTTTTGTGACCAATTTTATGGTCAGTTTTGGAGAAG
GTCCCGTGAGGTGCTGAGAAGAAGGTATATCCTTTTGTTTTAGGATAAAA
TGTTTTGTAGATATCTGTTAAGTCCATTTGTTTCATAACTTCTGTTAGTT
AGGATGTTGTCCCTATGCTGTCTATTGCGTCTAGCCAAGGCTTTATCTAT
CTTGTTGATTTTCTCAAAGAACCCGCTCCTCCTTTGGTTGATTCCTTGAA
TAGCCCCCCTTTGTTTCTCCTTTGGTGATCCCTGCCTTGCGTTTGTATTA
ACTTTCTGCTCCCTACTTCTTTTGGGGTGTATATGATTTCCTTTTTGTCC
CCACTTTTTTTTTTTCGCCCCCCCCCCCCCCTTTCTTCCCTTTTTTTCTC
CTTTTCTTTCTCCGTATTTTCCCCTTTTTCTTCTTTTCCTTTTCTCTTTT
TATCTTCCCGCCCTTTTTCTCTTTCTCCCCTTTTTTGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n10.b1 MSMg01no417_n10.b1 CHROMAT_FILE:
MSMg01no417_n10.b1 PHD_FILE: MSMg01no417_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:51 2005
         (426 letters)



>mm_chr4_29331522_29332347
          Length = 826

 Score =  717 bits (371), Expect = 0.0
 Identities = 392/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaggcagctagcagaatactgacttccaggaagctaagatgaggatcttataacccacac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaggcagctagcagaatactgacttccaggaagctaagatgaggatcttataacccacac 621

                                                                       
Query: 64  ccaaaatggcacacctataccaacagggccacaccttctaatcatgccactttctgggca 123
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 ccagaatggcacacctataccaacagggccacaccttctaatcatgccacttcctgggca 561

                                                                       
Query: 124 gggctgtactgttagttggctgtcctgaccatgaagacctcccagcttctcctgatccat 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggctgtactgttagctggctgtcctgaccatgaagacctcccagcttctcctgatccat 501

                                                                       
Query: 184 aaacacttctaggctgacaacagccttctttggtctcttggagctgccaataccaagcac 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 aaacacttctaggctgacaacagccttctttgatctcttggagctgccaataccaagcac 441

                                                                       
Query: 244 ctcctaactgtgttcctcattctggaattattaactcaacaaggtcatcctgtattaaca 303
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 440 ctcctaactgtgttcctcattctggaatgattaattcaacaaggtcatcctgtattaaca 381

                                                                       
Query: 304 accttcctcaaccattcattttgctacttgtcttctttgttaatctccatgttatagata 363
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 accttcctcaaccattcattttgctacttgtcttccttgttaatctccatgttatagata 321

                                                  
Query: 364 gatagatagatagatagatagatagatagatagatagat 402
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatagatagatagatagatagatagatagatagatagat 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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