BAC Information

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BAC

Clone NameMSMg01-417N13
Chromosome4 (Build37)
Map Location 45,410,993 - 45,411,508
singlet/doubletsinglet
Overlap geneMcart1
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Downstream geneShb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N13.T7 (MSMg01no417_n13.b1)MSMg01-417N13.TJ (MSMg01no417_n13.g1)
ACCAG513330AG513331
length827759
length of high quality
(start - end)
---516 (74 - 589)
definitionCHROMAT_FILE: MSMg01no417_n13.b1 PHD_FILE: MSMg01no417_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005CHROMAT_FILE: MSMg01no417_n13.g1 PHD_FILE: MSMg01no417_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGATTTCAATAGTGATGTAGTATTTCATTATGTAAATGGACTATAT
TTTCTGTATTCATTCCTCTGAAGAACAGCATCANGTTAATCTCCAGCGNT
CNTGAGATANATAAAAAAGGATGCTATAGAACAAAGGGACGCAGGAATCC
TTAATAAAAAAGTTGAAAAATCCTCCCGAAAANATGCCCAAGGGAGGACT
AATGGCCTTATCCTTCAAAAAAACTATTAACACCTTTTCGAAGGAAACCC
CATCCGCCTTCCCAAAGGGNNAAAACACACCTTGAATTTCCCCAACGCAT
GGAGGATGGTCCAATTCTCCCAATCCCCCCGAAAAATGGCGCCTGAGTTT
TAGGGAACCTCCCCTCCCCCCCAGAACGGTTAAAGGGGGCCTTTTTTCAA
AAAAGGTGGAAATTTGTTCCCGGGGGGCCGGGGGGGGCCCCCCGGAGAGA
GGCCTTAAAAAAACGGGGTGGCCCCAAAAAAAAAAAGAGGTCTCTCCCAA
GAGAGGAAGATTCCCCCCCACCCGGGGGGGGCCCCCCCCGAGGAAGAGGA
GCCCCCTCCCCGCGGGGGAAAAAACACCCGGCGTTTTTNTNNATAAAAAT
ACATAATAAAAAAGAACACTTTTCTTNAAATTTTTTTTCTTTCTCTTTGG
GGGGGGCGACAACATAAAAAAAAAAAAGGGAGAGGGGGTTTNTCTCCGCC
CCCCCCCGCATATATTATAAACACACACCCCCCCCCCCCCGGCCGGAGGA
TAATACAAAACATACCCACCACCACCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCCAAAAGATAGGGTGCCCTAGTT
AAATTCCGTTGTGTGCTTCATCGTGGTAAGCTGGTCACTGCAGGCTCTGC
TATTCTGCTTGCTTCTTTGTGCTACTGCTGTCGACAGCCAACCAGTGAGG
ACACTGTCCCTTGTGAATAGTAACTGTCATGTCTGTCCTGCTCTCTGGTA
CTGGACTTTAAACAAATAAACACTTCCATAAAGTTTTATTTCAGGAGTTT
TAATACAACCCCAAGTCTTCTTTTTTTCTGGTTTCTCAGTGCTACAGAGT
GAGCTAAGGAGTGGAGGGTGCTTCCCCTCTGGCCTCCCGTCTCTTTCTCT
GGGAAGAAAGATTTCAGGGTTCTGCTACTCAGGAGCCCGGTTGCCACTGT
GCCGTTTAGGAATGTCTGCTCTAAGTAGCAGCCCTGACTTCTGGTCAGGT
AGGATCCAACTGGCAGGAACCAGGCCAAGGAGTCACATAGCTATTTTCTG
GGTAAATGCTGTAATGGAAATACCATCAGTCTGGGAAGTAGCTTAAAATT
TTCAGGAAGCTGTCTGTGACCACCACCGGTCAGCTTGGTTCCCAGGAGTC
GACATAAGCAAGCCAGTTTCTTTGCTTTTTTTGTTTGGTTGGTTGGTTGN
TTGGNTTTTTAAAAGGGGTAGGAATTGAACCCAGGCCTTGGCCATCCAAG
AAAATGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n13.g1 MSMg01no417_n13.g1 CHROMAT_FILE:
MSMg01no417_n13.g1 PHD_FILE: MSMg01no417_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:51 2005
         (516 letters)



>mm_chr4_45410793_45411708
          Length = 916

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgccaaaagatagggtgccctagttaaattccgttgtgtgcttcatcgtggtaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 attgccaaaagatagggtgccctagttaaattccgttgtgtgcttcatcgtggtaagctg 657

                                                                       
Query: 61  gtcactgcaggctctgctattctgcttgcttctttgtgctactgctgtcgacagccaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtcactgcaggctctgctattctgcttgcttctttgtgctactgctgtcgacagccaacc 597

                                                                       
Query: 121 agtgaggacactgtcccttgtgaatagtaactgtcatgtctgtcctgctctctggtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agtgaggacactgtcccttgtgaatagtaactgtcatgtctgtcctgctctctggtactg 537

                                                                       
Query: 181 gactttaaacaaataaacacttccataaagttttatttcaggagttttaatacaacccca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 536 gactttaaacaaataaacacttccataaagttttatttcaggggttttaatgcaacccca 477

                                                                       
Query: 241 agtcttctttttttctggtttctcagtgctacagagtgagctaaggagtggagggtgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtcttctttttttctggtttctcagtgctacagagtgagctaaggagtggagggtgctt 417

                                                                       
Query: 301 cccctctggcctcccgtctctttctctgggaagaaagatttcagggttctgctactcagg 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cccctctggccgcccgtctctttctctgggaagaaagatttcagggttctgctactcagg 357

                                                                       
Query: 361 agcccggttgccactgtgccgtttaggaatgtctgctctaagtagcagccctgacttctg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agcccagttgccactgtgccgtttaggaatgtctgctctaagtagcagccctgacttctg 297

                                                                       
Query: 421 gtcaggtaggatccaactggcaggaaccaggccaaggagtcacatagctattttctgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtcaggtaggatccaactggcaggaaccaggccaaggagtcacatagctattttctgggt 237

                                               
Query: 481 aaatgctgtaatggaaataccatcagtctgggaagt 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaatgctgtaatggaaataccatcagtctgggaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)