Query= MSMg01no417_o02.b1 MSMg01no417_o02.b1 CHROMAT_FILE:
MSMg01no417_o02.b1 PHD_FILE: MSMg01no417_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:54 2005
(630 letters)
>mm_chr4_27755565_27756594
Length = 1030
Score = 735 bits (380), Expect = 0.0
Identities = 389/392 (99%)
Strand = Plus / Minus
Query: 239 acagcattttcaacaaatggtgcaggattaattatattttttacatagttttatgttatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 acagcattttcaacaaatggtgcaggattaattatattttttacatagttttatgttatg 971
Query: 299 tctatttgggagtatgtgcatatgaaaacagatgcctgaaaaagaagagatcatcagaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tctatttgggagtatgtgcatatgaaaacagatgcctgaaaaagaagagatcatcagaca 911
Query: 359 ttctggttgtggtgctgggagcaaaactcaggtctctagtaggcagaatgtgcctttaaa 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ttctggttgtggtgctgggagcaaaactcaggtctctagtaggcagaatgtgcctttaac 851
Query: 419 aactgagcaatttctctagcattccctactatattgcttgaaatattttcatttgacact 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cactgagcaatttctctagcattccctactatattgcttgaaatattttcatttgacact 791
Query: 479 gactatcgtaaaatatctattatagattctcatttagtattgtttttgttcagaactatt 538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gactatcgtaaaatatctattgtagattctcatttagtattgtttttgttcagaactatt 731
Query: 539 gctaagtttaaaatcaatgtggggaaataggtttggaatatatagtattacatgaaataa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gctaagtttaaaatcaatgtggggaaataggtttggaatatatagtattacatgaaataa 671
Query: 599 aatgatctcagaaaacatattttctcatatat 630
||||||||||||||||||||||||||||||||
Sbjct: 670 aatgatctcagaaaacatattttctcatatat 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_o02.g1 MSMg01no417_o02.g1 CHROMAT_FILE:
MSMg01no417_o02.g1 PHD_FILE: MSMg01no417_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:54 2005
(520 letters)
>mm_chr4_27602056_27602973
Length = 918
Score = 895 bits (463), Expect = 0.0
Identities = 504/518 (97%), Gaps = 3/518 (0%)
Strand = Plus / Plus
Query: 1 tttgattagctttgagccccaatttttaatggggttatttgatttttctggagtccacct 60
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 202 tttgattagctttgagccccagtttttaatggggttatttgatttt-ctggagtccacct 260
Query: 61 tcttgagttctttatatatatttgatagtagtcccctatatgatttaggataggtaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgagttctttatatatatttgatagtagtcccctatatgatttaggataggtaaaga 320
Query: 121 tcctttcccaatctgtaggtggtctttttgtcttattgaaggtgtcttttgccttacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttcccaatctgtaggtggtctttttgtcttattgaaggtgtcttttgccttacaga 380
Query: 181 agctttgcaattttatgaggtcccatttgttgattctcgatcttacagcagaagccattg 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttgcaattttatgaggtcccatttgttgattctcgatcttacagcagaagccattg 440
Query: 241 ctgttttattcaggattttttcccctgtacccatatcttcgaggcttttccctactttct 300
||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 ctgttctattcaggatgttttcccctctactcatatcttcgaggcttttccctactttct 500
Query: 301 cctctataagtttcagtgtctctggttttatgtggaggcacaagtggtggttatcatgta 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttataagtttcagtgtctctggttttatgtggaggcacaagtggtggttatcatgta 560
Query: 361 gaagaatgcgaataacagcttttatttaaaaaaaattgtgttgggcaactcttataatga 420
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 561 gaagaatgcgaataacagcttttatt-aaaaaaaat-gtgttgggcaactcttataatga 618
Query: 421 aaatgtatagaagaaaatttaatgagtgtaaatagaaaacggtgatttatattctgacaa 480
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 aaaggtatagaagaaaatttaatgagtgtaaatagaaaacggtgatttattttctgacaa 678
Query: 481 attactttagcatanacatttttgacttttgtctttta 518
|||||||||||||| ||||| |||||||||||||||||
Sbjct: 679 attactttagcataaacattattgacttttgtctttta 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space: 463080
Effective search space used: 463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
