Query= MSMg01no418_d08.b1 MSMg01no418_d08.b1 CHROMAT_FILE:
MSMg01no418_d08.b1 PHD_FILE: MSMg01no418_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:21 2005
(619 letters)
>mm_chr4_15413524_15414542
Length = 1019
Score = 857 bits (443), Expect = 0.0
Identities = 473/489 (96%), Gaps = 10/489 (2%)
Strand = Plus / Minus
Query: 5 gaattccacttcttttccaggccatctcttaggtcatccaggcccagcagccttcttgag 64
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattccacttcatttccagtccatctcttaggtcatccaggcccagcagccttcttgag 430
Query: 65 taaaaagccatttcttcaatttagttttcttctccttctttgataatacaagtgtgccaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 taaaaagccatttcttcaatttagttttcttctccttctttgataatacaagtgtgccaa 370
Query: 125 ccactgagaaataaaagggcgtatactagcaaaagctaatgcaccaggggacatctcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccactgagaaataaaagggcgtatactagcaaaagctaatgcaccaggggacatctcaaa 310
Query: 185 gagccatcaaactggtctctgtgaggagggctgattacttgtctacaaagataattttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagccatcaaactggtctctgtgaggagggctgattacttgtctacaaagataattttgc 250
Query: 245 ctgcagttagcgtttccagtttatgaagtctctgaaggacattctttttgttttgttttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgcagttagcgtttccagtttatgaagtctctgaaggacattctttttgttttgttttg 190
Query: 305 tttttg----------ttttttttggattttttgagacagggtttctctgtgtagtcctg 354
||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 189 gttttggttttttttttttttttttgattttttgagacagggtttctctgtgtagtcctg 130
Query: 355 gctgtcctggaactcactctgtagacaaggctggcctctaactcaaaaattcgcctgcat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129 gctgtcctggaactcactctgtagacaaggctggcctctaactcaaaaattcgactgcat 70
Query: 415 ctgccacccaagtcctcctgcaatctaatgagcacaagagcgatctgctcattgtggttg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ctgccacccaagtcctcctgcaatctaatgagcacaagagcgatctgctcattgtggttg 10
Query: 475 cttctggac 483
| |||||||
Sbjct: 9 cctctggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_d08.g1 MSMg01no418_d08.g1 CHROMAT_FILE:
MSMg01no418_d08.g1 PHD_FILE: MSMg01no418_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:21 2005
(537 letters)
>mm_chr4_15236667_15237603
Length = 937
Score = 977 bits (505), Expect = 0.0
Identities = 529/537 (98%)
Strand = Plus / Plus
Query: 1 cagactgctgctgatgtttttatattttataaagaacagaaaaatcaggttgaatgattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactgctgctgatgtttttatattttataaagaacagaaaaatcaggttgaatgattg 260
Query: 61 actctcatcttccagtaaatgatagagctagatcaaaaccagtcaaacctgaccactctc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 actctcatcttccagtaaatgatagagctaggtcaaaaccagtcaaacctgaccactctc 320
Query: 121 actctggcttccacacaaggtcttcaacggtctgtgcaagagcgtttaccccatccagga 180
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 actctggtttctacacaaggtcttcaacggtctgtgcaatagcgtttaccccatccagga 380
Query: 181 gagatgatattcctttaagggagtgctcagagggcttaagtcatggttctctttggtgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatgatattcctttaagggagtgctcagagggcttaagtcatggttctctttggtgta 440
Query: 241 catttttattcttttagccttttaatatttcctttatcaaagcccatggggttaaatttt 300
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 catttttaaccttttagccttttaatattttctttatcaaagcccatggggttaaatttt 500
Query: 301 aaaacactaagacttacctgttcttctgtgttccttgcagcaagaagcataaggcttcgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacactaagacttacctgttcttctgtgttccttgcagcaagaagcataaggcttcgg 560
Query: 361 gagagccacaccaccgtacatgtctgaaattctttgtgaaggacacagcggcataacccg 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gagagccacaccaccgtacatgtctgaaattctttgtgaaggacacagcagcataacccg 620
Query: 421 gtgaatccattcaggaataaaggcacagtgaatccagtggttggaatttttcttttgtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaatccattcaggaataaaggcacagtgaatccagtggttggaatttttcttttgtaa 680
Query: 481 tcaaaatagtaacaacattgaattaactttaaatgaagatgtacctgcatactaaga 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaaatagtaacaacattgaattaactttaaatgaagatgtacctgcatactaaga 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
