BAC Information

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BAC

Clone NameMSMg01-418E24
Chromosome4 (Build37)
Map Location 73,457,216 - 73,457,766
singlet/doubletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768
Downstream geneLOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418E24.T7 (MSMg01no418_e24.b1)MSMg01-418E24.TJ (MSMg01no418_e24.g1)
ACCAG513680AG513681
length750763
length of high quality
(start - end)		550 (73 - 622)502 (73 - 574)
definitionCHROMAT_FILE: MSMg01no418_e24.b1 PHD_FILE: MSMg01no418_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:29 2005CHROMAT_FILE: MSMg01no418_e24.g1 PHD_FILE: MSMg01no418_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGTAATTCTCATGCCTCAGAAAAATGCCCTACTTGAACCA
ATTATGAAATTCTTCATAATGGGCTTAAAGTAAGCTATGCTAGATATTTT
TGCATTAATTTTTAATTAAAGGAAGTGATAACCACCATTTCTTGGCATTT
TAAATAAACATGATTGCATTTATAATGATTATTCCATATTTGGGTGATAA
AATCATCAGCAGAACTATCATAGAGTACAATTGTCTTGCATATAATGTTT
TTTATTTACCAGTCCCTAATTATTTTACTTTATTAGGCAACTAAATCTGC
ACAGCAATCCCAAGGTAGGTATTGTTAGCATCAACCTCTTGATGTTGATA
AAAAAAGTATGACACAAGGCTGAGGTTTAGCTCTGTTAATTAGACCCTAA
GTACACCCTCCACATCAACAATGCTTTTCAAAGTAAGTAAAGCAAACATT
TAAGACTACTTGCGTAAGTATGAAAGACTCTTTTCTGGGAAGTTTTACTC
AGACGTCTTACTGTTTCACACAGAAAAGACTTTCTGTTCTCATTCTTCAA
ACTTTATTGAAAAATTAGTGGATATGACTCTAATTTATCTATTTGTTCCT
GTTCCTTTCTAATCCACATGTAAATAACAATATAAAACTCCTATGATTAT
ACCACAAACTTAGACATGCATTTTTGTTGGACCGTTTTCAAGGAAAAAAA


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGAAGGTAGCTGAGTCTGCAAAGACT
GACTGACTGATTACATCATTAGTGATATGACAATTTGGAATGTGACAGGT
CCAGGGGCTAATTACCTTATCTCTAGCCAGCTTCATTACTCTGAAGAGTA
ATTTATTGCCCATTTCCATGTCAGAACTTATACTCTGTGACTAAAAGATA
AACATTTTTTGGAATCTATTAATTTAGAATACCCCTAACTCTCACCTACC
AAAATCTTAAATTGTCATTATATACCATCTAAACTCTGTAGAAATCTTCA
TCCATCTTGCTATCAGTAACTCCCTGTCATACACAGCAATTTAATTTTAA
AATTTAAAATTTTTCCTTGATTTATAATATGACTTTGTTCTATAAAACTA
TAAAACTACATGAGACTTCTCCCATGTTACAACATGGAATTTAGGGTGAA
GGTGTGCTATTTAGTTTTATGCTAAATTGACATAAGCTAGAGTTTGGCAC
GAGAATCGTTTTGGAAGCAGGAACCTAAATTGAGGAAATGTCCCTATCAG
ACTGGGCTGTAGGCAACTTGGAGTACATTGCCTTCCTCATTGGAGGATTA
TTTGGAGAGGATCCCCATAACTGGGGGGCAATGCTACTGTAAGGCATGGG
GTCCCGGAGGCTTCAAAAAAAAAAGGCCCGCTTTCCTTACTAAGATGTCC
ATTATCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_e24.b1 MSMg01no418_e24.b1 CHROMAT_FILE:
MSMg01no418_e24.b1 PHD_FILE: MSMg01no418_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:29 2005
         (550 letters)



>mm_chr4_73457016_73457966
          Length = 951

 Score = 1050 bits (543), Expect = 0.0
 Identities = 549/551 (99%), Gaps = 1/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctcagaaaaatgccctacttgaaccaattatgaaattcttcataatgggcttaaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gcctcagaaaaatgccctacttgaaccaattatgaaattcttcataatgggcttaaagta 692

                                                                       
Query: 61  agctatgctagatatttttgcattaatttttaattaaaggaagtgataaccaccatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agctatgctagatatttttgcattaatttttaattaaaggaagtgataaccaccatttct 632

                                                                       
Query: 121 tggcattttaaataaacatgattgcatttataatgattattccatatttgggtgataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tggcattttaaataaacatgattgcatttataatgattattccatatttgggtgataaaa 572

                                                                       
Query: 181 tcatcagcagaactatcatagagtacaattgtcttgcatataatgttttttatttaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcatcagcagaactatcatagagtacaattgtcttgcatataatgttttttatttaccag 512

                                                                       
Query: 241 tccctaattattttactttattaggcaactaaatctgcacagcaatcccaaggtaggtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tccctaattattttactttattaggcaactaaatctgcacagcaatcccaaggtaggtat 452

                                                                       
Query: 301 tgttagcatcaacctcttgatgttgat-aaaaaaagtatgacacaaggctgaggtttagc 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 tgttagcatcaacctcttgatgttgataaaaaaaagtatgacacaaggctgaggtttagc 392

                                                                       
Query: 360 tctgttaattagaccctaagtacaccctccacatcaacaatgcttttcaaagtaagtaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctgttaattagaccctaagtacaccctccacatcaacaatgcttttcaaagtaagtaaa 332

                                                                       
Query: 420 gcaaacatttaagactacttgcgtaagtatgaaagactcttttctgggaagttttactca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcaaacatttaagactacttgcgtaagtatgaaagactcttttctgggaagttttactca 272

                                                                       
Query: 480 gacgtcttactgtttcacacagaaaagactttctgttctcattcttcaaactttattgaa 539
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 271 gacgtcttactgtttcacacagaaaagtctttctgttctcattcttcaaactttattgaa 212

                      
Query: 540 aaattagtgga 550
           |||||||||||
Sbjct: 211 aaattagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space:   508140
Effective search space used:   508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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