Query= MSMg01no418_f04.b1 MSMg01no418_f04.b1 CHROMAT_FILE:
MSMg01no418_f04.b1 PHD_FILE: MSMg01no418_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:29 2005
(564 letters)
>mm_chr4_148862343_148863305
Length = 963
Score = 955 bits (494), Expect = 0.0
Identities = 536/550 (97%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 5 gaattcacgggtttgcaggaaaaacacacacagcaaccgcaccgtgtaaagagttttacc 64
||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 gaattcacgggcttgga-gaaaaacacacacagcaaccgcaccgtgtaaagagctttacc 495
Query: 65 tcggctagccttgtccgaagttggcctggttgtttcttcgcaaacaatctgatgacttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcggctagccttgtccgaagttggcctggttgtttcttcgcaaacaatctgatgacttca 435
Query: 125 ggagttttaaaggcctggctgatggctgcctggatggcctagaaatgcaggaatgcaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggagttttaaaggcctggctgatggctgcctggatggcctagaaatgcaggaatgcaaag 375
Query: 185 actaaccacaatatcccacacaattagatctgcaacatctggctgacggctctcacgtga 244
||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct: 374 acttaccacaatatcccacacaattagatctgcaacatctgactgacagctctcacgtaa 315
Query: 245 gggttttggcacctgaaatccgttatttgtcatctctgagcgtgttactgaagccgagca 304
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 314 gggttttggcacctgaaatccgttatttgtcatctctgagcatgttactggagccgagca 255
Query: 305 gacacaaaatcaagaagctatcaggtaaacataccactcttcttcctttctttaatttta 364
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 254 gacacaaaatcaagaagctatcaggtaaacacaccactcttcttcctttctttagtttta 195
Query: 365 tttttttaatttaattttttgttttgaggtgttagggatagaatctagtgtcttgtacat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 194 tttttttaatttaattttttgttttgaggtgttagggatagaatctagtgtcttgtccat 135
Query: 425 gctaagcaagtacactaccacagagctacatcctcaccttcaaagtatgccttttctatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gctaagcaagtacactaccacagagctacatcctcaccttcaaagtatgccttttctatc 75
Query: 485 tgaaatatacccacaaaacaaaaacaaattacacacctactcacaccccacacaggctcg 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 74 tgaaatatacccacaaaacaaaaacaaattacacacccactcacaccccacacaggctcg 15
Query: 545 tacacacaca 554
||||||||||
Sbjct: 14 tacacacaca 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_f04.g1 MSMg01no418_f04.g1 CHROMAT_FILE:
MSMg01no418_f04.g1 PHD_FILE: MSMg01no418_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:29 2005
(517 letters)
>mm_chr4_148684754_148685670
Length = 917
Score = 977 bits (505), Expect = 0.0
Identities = 514/517 (99%)
Strand = Plus / Plus
Query: 1 aacatggtctgatgagactacccctgaaattacagtacaaagaatgtgagagacaaacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatggtctgatgagactacccctgaaattacagtacaaagaatgtgagagacaaacgc 260
Query: 61 cctttgcctctagttagcgtctccatagcagcacacagactagagctctgttgtgttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttgcctctagttagcgtctccatagcagcacacagactagagctctgttgtgttttc 320
Query: 121 acgagcatacacacacctggaactggaacagaagaaccggataagtacatgggtgtagga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 acgagcatacacacacctggaactggaacagaagaaccggatacgtacatgggtgtagga 380
Query: 181 gtataacatatgacagcagcaacatgaggagtcagtgggccagtgttagcccataaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtataacatatgacagcagcaacatgaggagtcagtgggccagtgttagcccataaatga 440
Query: 241 taatgatggatgctgggataattgataggatgagacagagcagactcactctggaggctg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatgagggatgctgggataattgataggatgagacagagcagactcactctggaggctg 500
Query: 301 aggaagatcaggagttcaagatcagccttgtgtttgaggacaacataagctatataagat 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaaatcaggagttcaagatcagccttgtgtttgaggacaacataagctatataagat 560
Query: 361 tacatctcaaaaagcaacaactacaacagaatgtgatttcctttttctatcccatgtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatctcaaaaagcaacaactacaacagaatgtgatttcctttttctatcccatgtaaa 620
Query: 421 atagaaattcaggtagattaaaaacctaaatcaaagcagggcatagtagcacatggcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaaattcaggtagattaaaaacctaaatcaaagcagggcatagtagcacatggcttt 680
Query: 481 aggcccagcactcagggaagcagaggcgggtagtgag 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcccagcactcagggaagcagaggcgggtagtgag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
