BAC Information

Click to search

BAC

Clone NameMSMg01-418K14
Chromosome4 (Build37)
Map Location 109,839,967 - 109,840,366
singlet/doubletsinglet
Overlap genenone
Upstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneElavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K14.T7 (MSMg01no418_k14.b1)MSMg01-418K14.TJ (MSMg01no418_k14.g1)
ACCAG513944AG513945
length719689
length of high quality
(start - end)
500 (75 - 574)401 (58 - 458)
definitionCHROMAT_FILE: MSMg01no418_k14.b1 PHD_FILE: MSMg01no418_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:55 2005CHROMAT_FILE: MSMg01no418_k14.g1 PHD_FILE: MSMg01no418_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACTAGAGAGG
ATCCGCGGAATTCAGGTATCACAAAGGCGTAGAANAATTTGAACGTCATG
TCAAGCTGGTATTGGCTTCTGGAACACCGAAAGGATTTCCCATCTTGGCT
CCATCGTTTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGG
ATCAGGAGCCTCATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAA
GAGGTTCCGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCAT
GTCAATACCTGATCCGGTCGATCCCCAGTGGAGATGGACACAATACCTCG
TGGTGATGAGACCATAACCTCAATCACCTGTGTGTTCATCTGGGAAGTCA
ATATGAAAGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTC
CGTGCCCTTATGGCAATCTGATTTACCTGCTTAAACACCTGCACTGGATA
TCCTGTCTGTTGTTGTGCAAATCGACCTTGATCAAGCAACATATCTCTAT
CCCATGCAAATTCAGCTTGATCAGTGAAAATAGGACATCCCAGTAAGGAG
AATCTATCCTCTTTCCAGACCTCCGGACAGAACGTCTGCCCATACATGGC
TGTCCAGGATGCATCAGAGAGGGTTAGCACACGCTAATTCATCTTCCCTC
CTCCGCCTCATCTCTGATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGTCGCCTTCATGATGGCTCAGGGGAGGCCTTCTTCTACTTA
TTACTCCCTATGCCAACTCTCATTTTCCTTTCCATTCATACACATACCAG
GCTTATAATCACAAACCACCACAGTGTTTATTTTCATTTGTTTTGTTTAA
TGTTCTCTCATGCCTCTGGGCTCTTGCACCATCTGCCCTCTACATGAAAT
ACTTTTAAATTCATTCACTCATTTATTTACATAATAACCTTTGAGAGACC
CCTACCATAAACAAAACATCCTGCTAACCTTAAGATTTGGCAGGTGAAAA
AGACTCAGTTCCCTGCCTCTAGGAGCTCATGGTCTAATAAGGAGAGAGAC
AAGTAAGTTGACAACCACATAGCAAGGCAGGGACATTGCTAATGAGAGCA
CAGGTCAAGGGGTAGCCTGGGGTGCAAGAGTTCTGGGACCCATTCTGGAT
GCTGTAAAAGCTGCCTGTATAAAATATACTAAGACAGATCTCAAAGGAAC
TATTTGGAGTTTAACTGACAACAACCGATGTGGGAATGAATAATAGTGAT
TAAGGCGAAAGCCTTTGTTATGCTCACATTTCTTGTTAGCTTAAAGACAG
TAAATTGGTTATGAACGTTCCCATTTTTCCTTGTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k14.g1 MSMg01no418_k14.g1 CHROMAT_FILE:
MSMg01no418_k14.g1 PHD_FILE: MSMg01no418_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:55 2005
         (401 letters)



>mm_chr4_109839767_109840567
          Length = 801

 Score =  752 bits (389), Expect = 0.0
 Identities = 398/401 (99%), Gaps = 1/401 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtcgccttcatgatggctcaggggaggccttcttctacttattactccctatgccaac 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtcgccttcaggatggctcaggggaggccttcttctacttattactccctatgccaac 260

                                                                       
Query: 61  tctcattttcctttccattcatacacataccaggcttataatcacaaaccaccacagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcattttcctttccattcatacacataccaggcttataatcacaaaccaccacagtgt 320

                                                                       
Query: 121 ttattttcatttgttttgtttaatgttctctcatgcctctgggctcttgcaccatctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattttcatttgttttgtttaatgttctctcatgcctctgggctcttgcaccatctgcc 380

                                                                       
Query: 181 ctctacatgaaatacttttaaattcattcactcatttatttacataataacctttgagag 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctctacatgaaatacttttaaattcattcactcatttatt-acataataacctttgagag 439

                                                                       
Query: 241 acccctaccataaacaaaacatcctgctaaccttaagatttggcaggtgaaaaagactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acccctaccataaacaaaacatcctgctaaccttaagatttggcaggtgaaaaagactca 499

                                                                       
Query: 301 gttccctgcctctaggagctcatggtctaataaggagagagacaagtaagttgacaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttccctgcctctaggagctcatggtctaataaggagagagacaagtaagttgacaacca 559

                                                    
Query: 361 catagcaaggcagggacattgctaatgagagcacaggtcaa 401
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 catagcaaggcagggacattgctaaagagagcacaggtcaa 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)