BAC Information

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BAC

Clone NameMSMg01-418L03
Chromosome4 (Build37)
Map Location 122,725,081 - 122,784,994
singlet/doubletdoublet
Overlap geneTrit1, Bmp8b
Upstream geneLOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1
Downstream geneOxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418L03.T7 (MSMg01no418_l03.b1)MSMg01-418L03.TJ (MSMg01no418_l03.g1)
ACCAG513970AG513971
length750748
length of high quality
(start - end)		594 (48 - 641)539 (76 - 614)
definitionCHROMAT_FILE: MSMg01no418_l03.b1 PHD_FILE: MSMg01no418_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:58 2005CHROMAT_FILE: MSMg01no418_l03.g1 PHD_FILE: MSMg01no418_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,784,536 - 122,784,994)(122,725,081 - 122,725,619)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAACTATGGATGTGGCTTTGGACATGCTATGTGTGCCTGGGC
TAGCCATTTAACCTGAGTCCATAAAGCAGGGATTCCCAAATAATTCACAT
GCTGTTGCTAGGAGCCAACAACAAATGGAAGAAGGTGAAAGGTCAAAGAT
CTTCTGGACTGGAAGAAAATTCTAAGCTTTCGGTTGGCTTTTAGCATCTA
GGTTTAAATGTCTACAAGACAGACACACGGAACATTGACCTCATGCCCCC
TTTCTGTGCTTGTATGACACAGGGTCTCACTCTGATGCCCAGACTGGCCT
TGAAGCTGTAGCAATTCTCCTGTCTCAGCCTCCTGAGTGCTGGGATTACA
AGCATGAGTCACCATGACCTTGAGAACTATGTTGTCCTATGTACAGAACG
GAGCTGCTGGTAGCATAAATAGGGATCATCAGGGCTAGGTTGACTCTCCA
CCGGCTTTCTGCTTGTCCATTTGTCACCTCTAGTGATCTACTAGGAATCC
CAGAAGGGAGTAATGTCCAGCCTGGAGAGAGCAAATGACATCCCCAAAGG
CCCATTTTGGTATTGGGCCCTGCTCTGTTCACAGCAGCTATTCCCACCAG
GGCTGTTCATGTCTTGACCCAAAGAGAAAGTTGGGGGAGGGGAGTAAAGG
CCTGGGCTGGGTGGTGACTCATTTTGAACACAGATTCCCCTGGTGAAATT


CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAGAGTAATATTAAGCAGAGTTG
TGGGACTGGGAGCGTGGCTCAGGAGTAAAACACTTGTTTGATAGTCACAA
GAATGTATGTTCAGTTCCCAGCAGGGTGCTCACAGAGATTCAAACAGTAA
AACATTGGTTTACTGACCAGTCCTTGGTAAACAAGTCTTAGCAAGGTAAG
AGAGAGCCATGGTCATTAGAGGCCGAGAGGCAGCAGCAGTGAACAGATAG
GGCAGACGGTCCTAGTTGTGACGAGAGTTCCTCCTGAGTCATTCTCAGAA
GTTTATGGAAGAATGTAACTTTTCCATAATGAAATGTTTGTACAGTCCAA
CCTTACGACACAGTTCAGTGTAAACTACTGGGCTGCCTCATGGCAGTGCT
GTGTGTGGCTGCTGTACCACGGGGTGATGAGCTCCTACTCACCTGGGTAG
CTGAAGCTGCACCAGGAGGGCACCAGGGGATCCTGATGAAAACAACAAAG
TTAGAGTAAAAAAATAGGACAAAATTTAGGAAGAGTCAACCACTGGACAT
AGTGATGCACTCTTAGTCCCAGCACTCGGGAGGCAGAGGAAGGTGAGTCT
CTGTGAGTTCCAGGCCAGCCTGGGCTACAGAGTAAGACACTGTCTCCTAA
AACCAAAGAGAAAAAAAAGTCTACCAGGAGACCCTCCGCCATTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_l03.b1 MSMg01no418_l03.b1 CHROMAT_FILE:
MSMg01no418_l03.b1 PHD_FILE: MSMg01no418_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:58 2005
         (594 letters)



>mm_chr4_122784536_122785529
          Length = 994

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcataactatggatgtggctttggacatgctatgtgtgcctgggctagccattta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaattcataactatggatgtggctttggacatgctatgtgtgcctgggctagccattta 400

                                                                       
Query: 64  acctgagtccataaagcagggattcccaaataattcacatgctgttgctaggagccaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acctgagtccataaagcagggattcccaaataattcacatgctgttgctaggagccaaca 340

                                                                       
Query: 124 acaaatggaagaaggtgaaaggtcaaagatcttctggactggaagaaaattctaagcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acaaatggaagaaggtgaaaggtcaaagatcttctggactggaagaaaattctaagcttt 280

                                                                       
Query: 184 cggttggcttttagcatctaggtttaaatgtctacaagacagacacacggaacattgacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cggttggcttttagcatctaggtttaaatgtctacaagacagacacacggaacattgacc 220

                                                                       
Query: 244 tcatgccccctttctgtgcttgtatgacacagggtctcactctgatgcccagactggcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcatgccccctttctgtgcttgtatgacacagggtctcactctgatgcccagactggcct 160

                                                                       
Query: 304 tgaagctgtagcaattctcctgtctcagcctcctgagtgctgggattacaagcatgagtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgaagctgtagcaattctcctgtctcagcctcctgagtgctgggattacaagcatgagtc 100

                                                                       
Query: 364 accatgaccttgagaactatgttgtcctatgtacagaacggagctgctggtagcataaat 423
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 99  accatgaccttgagaactatgttgtcctgtgtacagagcggagctgctggtagcataaat 40

                                                  
Query: 424 agggatcatcagggctaggttgactctccaccggctttc 462
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  agggatcatcagggctaggttgactctccaccggctttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_l03.g1 MSMg01no418_l03.g1 CHROMAT_FILE:
MSMg01no418_l03.g1 PHD_FILE: MSMg01no418_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:58 2005
         (539 letters)



>mm_chr4_122724881_122725819
          Length = 939

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagagtaatattaagcagagttgtgggactgggagcgtggctcaggagtaaaacactt 60
           ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 201 aatagagtaatattaagcagagttgtgggactgagagtgtggctcagtagtaaaacactt 260

                                                                       
Query: 61  gtttgatagtcacaagaatgtatgttcagttcccagcagggtgctcacagagattcaaac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgatagtcacaagaatgtgtgttcagttcccagcagggtgctcacagagattcaaac 320

                                                                       
Query: 121 agtaaaacattggtttactgaccagtccttggtaaacaagtcttagcaaggtaagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaacattggtttactgaccagtccttggtaaacaagtcttagcaaggtaagagaga 380

                                                                       
Query: 181 gccatggtcattagaggccgagaggcagcagcagtgaacagatagggcagacggtcctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccatggtcattagaggccgagaggcagcagcagtgaacagatagggcagacggtcctag 440

                                                                       
Query: 241 ttgtgacgagagttcctcctgagtcattctcagaagtttatggaagaatgtaacttttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgacgagagttcctcctgagtcattctcagaagtttatggaagaatgtaacttttcc 500

                                                                       
Query: 301 ataatgaaatgtttgtacagtccaaccttacgacacagttcagtgtaaactactgggctg 360
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 501 ataatgaaatgtttgtacagtccaaccgtaccacacagttcagtgtaaactactgggctg 560

                                                                       
Query: 361 cctcatggcagtgctgtgtgtggctgctgtaccacggggtgatgagctcctactcacctg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 cctcatggcagtgctgtgtgtggctgctgtaccacggggtgatgagctcccactcacctg 620

                                                                       
Query: 421 ggtagctgaagctgcaccaggagggcaccaggggatcctgatgaaaacaacaaagttaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtagctgaagctgcaccaggagggcaccaggggatcctgatgaaaacaacaaagttaga 680

                                                                      
Query: 481 gtaaaaaaataggacaaaatttaggaagagtcaaccactggacatagtgatgcactctt 539
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaaaaaataggacaaaatttagaaagagtcaaccactggacatagtgatgcactctt 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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