BAC Information

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BAC

Clone NameMSMg01-418M24
Chromosome4 (Build37)
Map Location 66,784,774 - 66,785,308
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M24.T7 (MSMg01no418_m24.b1)MSMg01-418M24.TJ (MSMg01no418_m24.g1)
ACCAG514060AG514061
length767760
length of high quality
(start - end)
537 (72 - 608)464 (76 - 539)
definitionCHROMAT_FILE: MSMg01no418_m24.b1 PHD_FILE: MSMg01no418_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:06 2005CHROMAT_FILE: MSMg01no418_m24.g1 PHD_FILE: MSMg01no418_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAACAGTTACTAGTACAGCCTACCTTACAATGAAGACATCTTT
GGCAAGTTGAACTCTTATAAATTTTTTGAGGAAGCTTAAGAGGGAGAGAT
GTGTAGTAAGGGTGATTATATAAAATTAAAGATCCTGAGAATATAAATAT
TAAAAAATAAAGGAGAAATAACACTGGTGAAAAAAGTAAACTAAGAAAGT
ATAGTTATTTACTGATGAAAATGACATTGTTTAAAAGGAAAATATATTGA
AAAATATGATATAAATTCTGAAATTGTTTACATAATGATAAATGCAATAA
TGATAAAACCTGTATGTTATATTAGTACAGAAGCAGCCACATTGGTCAAT
GGAATCCAATGGAAGATCCACAATGAAGCCACAAATCTATGGAAATTTGA
TTTGTTATAAAGAAGCCAAAACCATACGTTGGTGGGTGAGGAAAGAAAGC
ATCTTCAACAAACAGTGGTGGCTTAACTGGATTTTTCATGTACAAGCATG
CAAGTAGATCTATGTATATTACTTTGCACAAAACTGATATCCAGGGGAGT
CAAGGACCTCAACATAAAACTTAATACATTAAATCTCATAGAAGAGAAAG
TGGGAAATAGCCTTGTATGTCTTGGTGTAAGAACAAATTTCCTGAACAGA
AACCAATGGCTCAGACTCTAGATCCACCACTGATTAATAGACCCCCTGAC
ACTGCATAGCTTCTGTC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTATGCAAATGATGTGTTCAT
AGAACTTTAAAACTTTAACCACCTTGTGATTGCCATATGCAGGGATCCAT
CCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATT
TTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCCGGGGC
CTAGCAAACACAGAAGTGGATGATCACATTCAGCTATTGGATGGGTCACA
CCCCAATGGAGGAGCTAGAGAAATTATCTCAAGGAGCTAAAGGGAACTGC
AACCATATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAGCTCT
TGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGC
AAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGA
ACACCAGGGCCAAAAAGGAGGAGTGGGTGGGTAGGGGATTGGGGGNGNNN
NNNTCTTTNTTTGGNATGCTTTTGCTGTTGNTTTTTTTTTTTTGTTTGTT
TCTTTTGTTTTGTGTCCCTCCAGCTCTCTTTATTCTCGCTTGCTGTCCCT
GTTATCCCTTTTTTTTTATTTCACAGTTCCCCCTTTGTGCNATCCCCTCA
TGTTTCAACTAGAGCTTACTACTGTTTAAACTTAAAAGACCTCTTTACCA
CTATCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m24.b1 MSMg01no418_m24.b1 CHROMAT_FILE:
MSMg01no418_m24.b1 PHD_FILE: MSMg01no418_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:06 2005
         (537 letters)



>mm_chr4_66784574_66785510
          Length = 937

 Score =  957 bits (495), Expect = 0.0
 Identities = 526/537 (97%), Gaps = 2/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcctaccttacaatgaagacatctttggcaagttgaactcttataaattttttgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcctaccttacaatgaagacatctttggcaagttgaactcttataaattttttgagg 260

                                                                       
Query: 61  aagcttaagagggagagatgtgtagtaagggtgattatataaaattaaagatcctgagaa 120
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aagcttaagagggagagatgggtagtaagagtgattatataaaattaaagatcctgagaa 320

                                                                       
Query: 121 tataaatattaaaaaataaaggagaaataacactggtgaaaaaagtaaactaagaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaatattaaaaaataaaggagaaataacactggtgaaaaaagtaaactaagaaagta 380

                                                                       
Query: 181 tagttatttactgatgaaaatgacattgtttaaaaggaaaatatattgaaaaatatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttatttactgatgaaaatgacattgtttaaaaggaaaatatattgaaaaatatgata 440

                                                                       
Query: 241 taaattctgaaattgtttacataatgataaatgcaataatgataaaacctgtatgttata 300
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 441 taaattctgaaattgaaaacataatgataaatgcaataatgataaaacctgtatggtat- 499

                                                                       
Query: 301 ttagtacagaagcagccacattggtcaatggaatccaatggaagatccacaatgaagcca 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 -tagtacagaagcagccacattggtcaatggaatccaatggaagatccacaatgaagcca 558

                                                                       
Query: 361 caaatctatggaaatttgatttgttataaagaagccaaaaccatacgttggtgggtgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caaatctatggaaatttgatttgttataaagaagccaaaaccatacgttggtgggtgagg 618

                                                                       
Query: 421 aaagaaagcatcttcaacaaacagtggtggcttaactggatttttcatgtacaagcatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaagaaagcatcttcaacaaacagtggtggcttaactggatttttcatgtacaagcatgc 678

                                                                    
Query: 481 aagtagatctatgtatattactttgcacaaaactgatatccaggggagtcaaggacc 537
           ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct: 679 aagtagatctatgtatattaccttgcacaaaactgaaatccaggtgagtcaaggacc 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)