NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCTCTAGCTCTGCTCTCATGAGTGACTAAGTGTAATTGAT
ACATGGTAAATCATCTTTCTTACTGTCTCAGCTTAAGAGAGCAAACACAC
AAACAAGAAAAATCAAGTCAAAACTAAAGAAAATAACACAAACAAAAGTA
TTGATCTATCTAACTGTCATGTTTCATTTTCTTTTAATTTTTCCTAGAAC
CAGAGACATCCATAAATTCATCCCGATATCTTAATGATGTTTTCCTCTGT
CTTAGCTTCACTGTATGTGGAATATGCATAGACTATACTCATGGTCAGTA
CAGATTCACACTCTAGAAACATAAAAAATATCATTTAGTATTACTTTTGT
TAGCTCATGAAGAGAAGGTTGTTTTACTAATGATACATATACTAATCGAT
GGGGGAAGAATATGGCAACAAATGAACATAATGCGCTGCCACTCAACAAT
TTAGGAAACTGGCATATTGTAAATGCTCTCTGATGTGCAATCACATAATA
AATGTAACTCTGCCACTATTGCAAACAGTGGATCTGTGTAGAACTAGGGC
AAATATTCTTATTTAATTCAGTCTGTAGTTGGAGAAACCATGACTTAGAG
AGAATCAAATGAAATTTTTACAAGGTACCACTGCCAAGAGTTTTCAAATG
CAAGACTCACACCCAACACCATCAACCACGTATTTTGTGTAN

GTGCACGANAGCCCGATGAAGTGGGTGGCCTGGNGGCCGCCTGTTCGAAT
AATTTAGGTGAACTATAGATTATCAGCGGAATTCTCACCTGAGGAATAAC
GAATGGTTGAGAAACACCTGAAAAAATGTTCTGCATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCGGATGCTGGCGAGGATGTGGAC
AAAGAGGAACACTCCTCCATTGTTTGTGGGATTGCAAGCTTATACAACCA
CTCTGGAAATCAGTCTGGTGGTTCCTCTTTATTATTGGACATAGTACTAC
TGGAGGATCCTGCAATACCTCTCATGGGCATATATCCAGAAGATGTTCCA
AGTGGTAAGTAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGAAAAGAACACAGATGCCCCTCAACAGAGGAATGGA
TACAAAAAATGTGGTACATTTACAGAATGGAGCAGTACTCAGCTATTAAA
AAAATGAATTTATGAAATTTCTAGGCAAATGGTTGGACTTGGAGGGCATC
ATCCTGAATGAAGTAACGCAATCTAAAAGAACTCAAATAACATGTACTCA
CTGATGAGTGGATATTATCCCAGAAACATAGAATACCCCAGATATAAGAT
ACCATTTGCAAAACACATGAAACTCAAGAAGATTGACGACAAAAGTGG

Query= MSMg01no418_n12.b1 MSMg01no418_n12.b1 CHROMAT_FILE:
MSMg01no418_n12.b1 PHD_FILE: MSMg01no418_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:09 2005
         (623 letters)



>mm_chr4_67197030_67198044
          Length = 1015

 Score = 1137 bits (588), Expect = 0.0
 Identities = 609/620 (98%), Gaps = 8/620 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgctctagctctgctctcatgagtgactaagtgtaattgatacatggtaaatc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ggaattctgctctagttctgctctcatgagtgactaagtgtaattgatacatggtaaatc 756

                                                                       
Query: 64  atctttcttactgtctcagcttaagagagcaaacacacaaacaagaaaaatcaagtcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atctttcttactgtctcagcttaagagagcaaacacacaaacaagaaaaatcaagtcaaa 696

                                                                       
Query: 124 actaaagaaaataacacaaacaaaagtattgatctatctaactgtcatgtttcattttct 183
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 695 actaaagaaaataacacaaacaaaagtattgatctat----ctgtcatgtttcattttct 640

                                                                       
Query: 184 tttaatttttcctagaaccagagacatccataaattcatcccgatatcttaatgatgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 639 tttaatttttcctagaaccagagacatccataaattcatcccgatatattaatgatgttt 580

                                                                       
Query: 244 tcctctgtcttagcttcactgtatgtggaatatgcatagactatactcatggtcagtaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcctctgtcttagcttcactgtatgtggaatatgcatagactatactcatggtcagtaca 520

                                                                       
Query: 304 gattcacactctagaaacataaaaaatatcatttagtattacttttgttagctcatgaag 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gattcacactctagaatcataaaaaatatcatttagtattacttttgttagctcatgaag 460

                                                                       
Query: 364 agaaggttgttttactaatgatacatatactaatcgatgggggaagaatatggcaacaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agaaggttgttttactaatgatacatatactaatcgatgggggaagaatatggcaacaaa 400

                                                                       
Query: 424 tgaacataatgcgctgccactcaacaatttaggaaactggcatattgtaaatgctctctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgaacataatgcgctgccactcaacaatttaggaaactggcatattgtaaatgctctctg 340

                                                                       
Query: 484 atgtgcaatcacataataaatgtaactctgccactattgcaaacagtggatctgtgtaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atgtgcaatcacataataaatgtaactctgccactattgcaaacagtggatctgtgtaga 280

                                                                       
Query: 544 actagggcaaatattcttatttaattcagtctgtagttggagaaaccatgacttagagag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 279 actagggcaaatattcttatttaattcagtctgtagttggagaaaccatgactt----ag 224

                               
Query: 604 aatcaaatgaaatttttaca 623
           ||||||||||||||||||||
Sbjct: 223 aatcaaatgaaatttttaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1015
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1005
Effective search space:   616065
Effective search space used:   616065
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)