BAC Information

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BAC

Clone NameMSMg01-419B15
Chromosome4 (Build37)
Map Location 83,557,187 - 83,557,433
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419B15.T7 (MSMg01no419_b15.b1)MSMg01-419B15.TJ (MSMg01no419_b15.g1)
ACCAG514282AG514283
length733766
length of high quality
(start - end)
219 (269 - 487)246 (66 - 311)
definitionCHROMAT_FILE: MSMg01no419_b15.b1 PHD_FILE: MSMg01no419_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:30 2005CHROMAT_FILE: MSMg01no419_b15.g1 PHD_FILE: MSMg01no419_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATAATTTGGGGCGCTAAAAGAGNNAAAAATTTCAAAACACGGC
GGAAATNTGNGTTTTTCCACAAAACCCGGGGGTTTTTTGGGGGGGAGACA
TTTAAAGACTGCGTTTATTTTCTTACGGGGTATAGAACTATTCACATAAA
TTACCCGAGCTTGAGTTTAATTTGGGAAATGGGATCTGGCCAGAAAACCC
CCCATTTCTCATAGAATTTTACAAATTTGGAAAGGAACGGGTTTTGAAAG
AAGAACTTATGGGTCCTTTGAATTTCCTCAGAGTCTGTTGTTGTCTCTCT
TTTCATTTCTGATTTTGTGATTTTGATTTTTTCTCTCTCTCTTCCTCTCT
TCCTCTCTTCCTCTCTTCCTCTCTTCCTCTCTTCCTCTCTTCCTCTCTTC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTGCCTTTTAGNTAGTTTGGCTAATCTATCTTGTTGATGTTCTCAAAG
AACCAACTCTTGGTTTTGTTGATTGTGTTGCTCTGTTTGTTTCTTGATTT
ATCGATTTCCGCTCTGAGTTTGATTATTTCCCCCATCTACTTCTCCTGGG
CGGGGTTGTTTCTTTTTGTCCAAAGCCCCCCCCGGGGCCCTAAAATGCCT
TTTTGAATAACCCCACCCCCCTCGGAAGGGTCCAAAAAAAGAAAATCTCT
CCTACTACCGCTTTTTTCCCCTCTTCCCCTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTAGAGAGAATACAGAACAGCTGCTTTCAGGGCC
TGAAAGTACGTCTTGATAGCACAGACCAGAGTCAGAGTAGCAGTCAGCCT
TGGGAGATCCCTAGCTGAATCTAAAGATGAGATCTAGCTAAGGCACATAC
AGCATCTGCACGATATGTAGCCATAAACACTTGGGGCAAGGGTTGTGTGT
CCTGTGTGAAGGCCTTGGAGCACGCGGCACTCAGCCCATGCTCCTCTTTC
CATAGACACTTAGGTTGTGTTCTCACCCTGTTGGACAGGGAAAACAGAAA
CCAGCTACCGAAGCATGTGGGATGCCTCCAGACCCCTGGAACCAAGACTT
TGCTGAGACTGAGCCAATGAATTCAGAGCCATCCCAACCGAACAACATTC
TCCTTGTTTCCACCTTATTTAGCATGTGAGGGTCCATGCCCACTCTGCCA
CTAGACGTTGAAGTGCCCTTACGTCCCACAGGCCTGGACACCCTCTCTTC
AGCCCATCTGTCCACTTACTCCTGGCTCTGTGTCCTAGAGATACTTCCAG
TAAAGGGCTCTGTGTCTTGTTCTGCATCAGGCAGGAAGAAGCAAAAGCTT
GGTTCTGTTTTGAATACCCCACAGCTCAGTACTTTAAAAGGGAAAATCCA
TATCCCCCGCCCATTCTTGGTCAATAAGAGGGGAACCCCCTTTTTCTTCT
TCTGTGAACCAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_b15.g1 MSMg01no419_b15.g1 CHROMAT_FILE:
MSMg01no419_b15.g1 PHD_FILE: MSMg01no419_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:30 2005
         (246 letters)



>mm_chr4_83556987_83557635
          Length = 649

 Score =  424 bits (219), Expect = e-123
 Identities = 239/247 (96%), Gaps = 3/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagagagaatacagaacagctgctttcagggcctgaaagtacgtcttgatagcacaga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 447 cttagagagaatacagaacagctgctttcagggcctgaaagtacatcttgatagcacaga 388

                                                                       
Query: 61  ccagagtcagagtagcagtcagccttgggagatccctagctgaatctaaagatgagatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccagagtcagagtagcagtcagccttgggagatccctagctgaatctaaagatgagatct 328

                                                                       
Query: 121 agctaaggcacatacagcatctgcacgatatgtagccataaacacttggggcaagggttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 327 agctaaggcacatacagcatctgcacgatatgtagccataaacacttggggcaagggcag 268

                                                                       
Query: 181 tgtgtcctgtgtgaaggccttggagcacgcggcactc---agcccatgctcctctttcca 237
           |||| |||||||||||||||||||||| |||||||||   ||||||||||||||||||||
Sbjct: 267 tgtgacctgtgtgaaggccttggagcatgcggcactcctcagcccatgctcctctttcca 208

                  
Query: 238 tagacac 244
           |||||||
Sbjct: 207 tagacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 649
Length adjustment: 9
Effective length of query: 237
Effective length of database: 640
Effective search space:   151680
Effective search space used:   151680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)