Query= MSMg01no419_d14.b1 MSMg01no419_d14.b1 CHROMAT_FILE:
MSMg01no419_d14.b1 PHD_FILE: MSMg01no419_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
(242 letters)
>mm_chr4_100718277_100718918
Length = 642
Score = 449 bits (232), Expect = e-131
Identities = 238/240 (99%)
Strand = Plus / Plus
Query: 1 atagttatactctattctgtgtgcatctgcctgggagatacatgttccttatggttatga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagttatactctactctgtgtgcatctgcctgggagatacatgttccttatggttatga 260
Query: 61 cacctgggagagtttcaacagtatgcatggaattcacattaccctgactcactgaagccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgggagagtttcaacagtatgcatggaattcacattaccctgactcactgaagccc 320
Query: 121 tctttgtcatgctcagccttgaagtctttttctgtattagaaataagttcagcagcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgtcatgctcagccttgaagtctttttctgtattagaaataagttcagcagcttga 380
Query: 181 aagcgtatcaaaagacagacttgtgctcatgtgaaaactattctccaatcgtctaacttc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgtatcaaaagacagacttgtgctcatgtgaaaactattctccaatcgtctaacttc 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_d14.g1 MSMg01no419_d14.g1 CHROMAT_FILE:
MSMg01no419_d14.g1 PHD_FILE: MSMg01no419_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
(527 letters)
>mm_chr4_100921260_100922190
Length = 931
Score = 984 bits (509), Expect = 0.0
Identities = 524/531 (98%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 1 actttgtaaaccaggctggccaagaactaacagaaatctgcttgcctctgcctcccaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actttgtaaaccaggctggccaagaactaacagaaatctgcttgcctctgcctcccaagt 561
Query: 61 gctgtgattaaaggcatttgccaacacactcactgagttaaaaaacaaaacaaaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgtgattaaaggcatttgccaacacactcactgagttaaaaaacaaaacaaaacaacc 501
Query: 121 cccccc----acacacattttcaatgagaccatgatatgcagttgttttttaaatgtggt 176
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccccccacaaacacacattttcaatgagaccatgatatgcagttgttttttaaatgtggt 441
Query: 177 tttcttaccaggtgatttcttacccctaccccacagtcataacttttgttttcactgtta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttcttaccaggtgatttcttacccctaccccacagtcataacttttgttttcactgtta 381
Query: 237 tgtatgatgcattgtttttattgcaggatggaccagagtttactaacttaattctgcact 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtatgatgcattgtttttattgcaggatggaccagagtttactaacttaattctgcact 321
Query: 297 gtgggttctgtatattgcttgtctgacctatactacatgcataaccatttatacatatat 356
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgggctctgtatattgcttgtctgacctatactacatgcataaccatttatacatatat 261
Query: 357 acataatatacatatatatttctgattatttccttaggatactattagaggtattaactc 416
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acat-atatacatatatatttctgattatttccttaggatactattagaggtattaactc 202
Query: 417 aaagtttttccaaattttagttacatgagttacatgcatgatttaaaaagcacacattga 476
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtttttccaaattttagttacatgagttacatgcatgatttaaaaagcacacattga 142
Query: 477 ttgtgggctattgatagaccagtggtaaagtgcttgtctagcatgtgtgaa 527
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttgtgggctattgatagaccagtggtaaagtgcttgtctagcatgtgtgaa 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 931
Length adjustment: 10
Effective length of query: 517
Effective length of database: 921
Effective search space: 476157
Effective search space used: 476157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
