Query= MSMg01no419_f02.b1 MSMg01no419_f02.b1 CHROMAT_FILE:
MSMg01no419_f02.b1 PHD_FILE: MSMg01no419_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(302 letters)
>mm_chr4_100046260_100046961
Length = 702
Score = 505 bits (261), Expect = e-147
Identities = 288/307 (93%), Gaps = 16/307 (5%)
Strand = Plus / Plus
Query: 1 tgtttcaaaggttaaagcattcaagataggaaaattggcagatggtggatactaattgct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 185 tgtttcaaaggttaaagcattcaagataggaaaattggcaggtggtggatactaattgct 244
Query: 61 actctgtgacccagtgtttgccaagccctccagttctccttcagttgtcacaattgctc- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 actctgtgacccagtgtttgccaagccctccagttctccttcagttgtcacaattgctct 304
Query: 120 ---------------acactcacccctcaggctgcctcacactctcctctttcccactct 164
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gccttactctcccctacactcacccctcaggctgcctcacactctcctctttcccactct 364
Query: 165 aggatgcctcggacctttaagatttattctggagaagtgtagggtggagtaggatggggc 224
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 365 aggatgcctcggacctttaagattgattctgaagaagtgtagggtggagtaggatggggc 424
Query: 225 actccagagcaatgataaaatacagttcaagcccttgaatcccgggctgtgtgagcatgc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actccagagcaatgataaaatacagttcaagcccttgaatcccgggctgtgtgagcatgc 484
Query: 285 tgggcgg 291
|||||||
Sbjct: 485 tgggcgg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_f02.g1 MSMg01no419_f02.g1 CHROMAT_FILE:
MSMg01no419_f02.g1 PHD_FILE: MSMg01no419_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(345 letters)
>mm_chr4_100221270_100222014
Length = 745
Score = 659 bits (341), Expect = 0.0
Identities = 344/345 (99%)
Strand = Plus / Minus
Query: 1 tttctcagccccagcttcaaggttatcacaagccctatgacaccatgagcagggaattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttctcagccccagcttcaaggttatcacaagccctatgacaccatgagcagggaattgg 486
Query: 61 ccaagatatcctgaaattcctggtacatagatactgtgaaatggcaagcgtgtgctgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccaagatatcctgaaattcctggtacatagatactgtgaaatggcaagcgtgtgctgtgg 426
Query: 121 taatttgtttgttgtacagcaacagaagccctaggactgcaagatcaagagagaagtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taatttgtttgttgtacagcaacagaagccctaggactgcaagatcaagagagaagtgct 366
Query: 181 ataagagctcttggggaacttccagagaggctgggatgggctgaggatgccttgtgagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ataagagctcttggggaacttccagagaggctgggatgggctgaggatgccttgtgagaa 306
Query: 241 catatgtaaaatcagaggtgttttggatttttggaatatctaactatacataatgaaata 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catatggaaaatcagaggtgttttggatttttggaatatctaactatacataatgaaata 246
Query: 301 tcttgtgatggcccaagcttaaacacagaacttatttgtacttgg 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcttgtgatggcccaagcttaaacacagaacttatttgtacttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
