BAC Information

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BAC

Clone NameMSMg01-419G24
Chromosome4 (Build37)
Map Location 11,420,965 - 11,421,330
singlet/doubletsinglet
Overlap gene1110037F02Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834
Downstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419G24.T7 (MSMg01no419_g24.b1)MSMg01-419G24.TJ (MSMg01no419_g24.g1)
ACCAG514539AG514540
length772734
length of high quality
(start - end)
366 (82 - 447)---
definitionCHROMAT_FILE: MSMg01no419_g24.b1 PHD_FILE: MSMg01no419_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:59 2005CHROMAT_FILE: MSMg01no419_g24.g1 PHD_FILE: MSMg01no419_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTAAAGAGC
GCGGAANTCAGCTCCTCTCATCTATTATTCCAGAAAACCCAATACATCCT
CTTCTAAACTCCAAAGGCATCGCATCTATGTGGCATACAGAGAGATACAC
ACATGCATACAAATAGTAAGTATTTTTAAATAGCTGATGATTTATCATGA
TAATAATGTACCCAATTAAGTCTCTCAGTTGATATTACATAAAACTTCCT
GCAGTACATTTACCTCTTCACTCATGTTTTTCTTAGACCAAACTTTTTCT
ATTCATGGCTCCAGACACTCATGATACTTTAATGGATGCTTCAAATATGC
AGATACATAAAACAGACATCTACTGATAAGTGAATAGAAATGAAGTAGGC
AAGTCTGGCCACGCCTTTAAATGGAAGGTTCAGTCTGTGACTCGCCTTCC
TCCCTTTCTTCAATATTCTGCTGCTTTTCTAAAAATGTCCTAATGAGCTA
CCATGAACAGTACAGGCAATGCTCTAAGGTTGGCCGAGGAAACAATATAG
ACCGAACCTGGGCCCACACCAAAACTGCTGTATTCTTCCAAAAAAAATTC
AAATCTTTTCAAATTATTAAAGAAAAAATCCTTCCCCTGGAGGGCGCCTA
AACAAAAAAAAAAAAAAACCCCTTTTGGGGGGGTAAGTTTTGGGGATTCC
CCCCCCTCTCCNCCCCCTCCCCCCCTTTTTCCCCCCTCTCTTCTATTCTC
TCCTCTTTTTTCTTCTCCCCTT
TGGCTTGCGCCGCTGGCTTCACTTTATTGACCTTAAAGATTTCCGATTCC
GGACGCCGAGTGAAAAAGAGAAGAGGGGAGTTGGGGAGGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCNNNNNNNTTTCNTTTGTGGTGTGTGTTGN
TTTTTGTGTTTCTTGTGGGTGGTGTTTGTTTTATGTCTTGCTTGGGGGGG
GGGCCTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTTTTTTNNNNNCNNNNNTNNNNNNNNNNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCGTTTTTNNNNN
NNTNNTNNNNNTTTTNTNTTTTNCNCCCCCTTCCCCCCCCCCCCCTTTTC
CTCTCCTCTCTTTTCTCNCCCCCCCTTTCCTCCCCCTCTTCTTTTTTTCC
CTTTCCCCCCNNCTTTCCCTTTTTCTTCTCCCCNCTCCCCTNTTCCCCCT
CCCCCCTTTTTTTTTCCTTTCTTCTTTTTTCCTTTTTTTCTCCTTTTTTC
TTTTTNCCCTTTTCNCTCCTTTTCTCTTTTTTTTCTTTTCTTTTCNCCCN
CTTTTTTCTCCTCCTCCTTTCTNTCNCTCTCCTTTTCCCNCCTTTCTCTC
CCCTTCTTCTTCCCCTCTTTTTCTTCCCTTCCCCCTTTCNCTCTTTTCCN
TCCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_g24.b1 MSMg01no419_g24.b1 CHROMAT_FILE:
MSMg01no419_g24.b1 PHD_FILE: MSMg01no419_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:59 2005
         (366 letters)



>mm_chr4_11420765_11421530
          Length = 766

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaacccaatacatcctcttctaaactccaaaggcatcgcatctatgtggcatacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agaaaacccaatacatcctcttctaaactccaaaggcatcgcatctatgtggcatacaga 507

                                                                       
Query: 61  gagatacacacatgcatacaaatagtaagtatttttaaatagctgatgatttatcatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagatacacacatgcatacaaatagtaagtatttttaaatagctgatgatttatcatgat 447

                                                                       
Query: 121 aataatgtacccaattaagtctctcagttgatattacataaaacttcctgcagtacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aataatgtacccaattaagtctctcagttgatattacataaaacttcctgcagtacattt 387

                                                                       
Query: 181 acctcttcactcatgtttttcttagaccaaactttttctattcatggctccagacactca 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acctcttcactcatgttttgcttagaccaaactttttctattcatggctccagacactca 327

                                                                       
Query: 241 tgatactttaatggatgcttcaaatatgcagatacataaaacagacatctactgataagt 300
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 agaaactttaatggatgcttcaaatatgcagatacataaaacagacatctactgataaat 267

                                                                       
Query: 301 gaatagaaatgaagtaggcaagtctggccacgcctttaaatggaaggttcagtctgtgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaatagaaatgaagtaggcaagtctggccacgcctttaaatggaaggttcagtctgtgac 207

                 
Query: 361 tcgcct 366
           ||||||
Sbjct: 206 tcgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)